Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU247408 |
| length | 557 |
| RNA type | TUCP |
| GC content | 0.40 |
| exon number | 1 |
| gene id | G218104 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000051 |
| NCBI id | null |
| chromosome length | 8436717 |
| location | 2059987 ~ 2066083 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU247425 | lncRNA | upstream | 7384 | 2052554 ~ 2053150 (+) | True | G218118 |
| TU247402 | lncRNA | upstream | 38040 | 2021995 ~ 2022494 (+) | True | G218103 |
| TU247257 | lncRNA | upstream | 57370 | 1993373 ~ 2003164 (+) | True | G217968 |
| TU247255 | lncRNA | upstream | 97891 | 1961104 ~ 1962643 (+) | True | G217966 |
| TU247389 | lncRNA | upstream | 115432 | 1944870 ~ 1945102 (+) | True | G218090 |
| TU247436 | lncRNA | downstream | 9727 | 2075416 ~ 2075640 (+) | True | G218129 |
| TU247464 | lncRNA | downstream | 55591 | 2121280 ~ 2121584 (+) | True | G218149 |
| TU247466 | lncRNA | downstream | 56233 | 2121922 ~ 2179525 (+) | True | G218150 |
| TU247513 | lncRNA | downstream | 139123 | 2204812 ~ 2205133 (+) | True | G218197 |
| TU247516 | lncRNA | downstream | 142841 | 2208530 ~ 2208788 (+) | True | G218200 |
| CI01000051_01976321_01985259.mRNA | mRNA | upstream | 74375 | 1976080 ~ 1986159 (+) | True | CI01000051_01976321_01985259 |
| CI01000051_01965924_01969562.mRNA | mRNA | upstream | 90932 | 1965703 ~ 1969602 (+) | True | CI01000051_01965924_01969562 |
| CI01000051_01945810_01948306.mRNA | mRNA | upstream | 112048 | 1945810 ~ 1948486 (+) | True | CI01000051_01945810_01948306 |
| CI01000051_01765268_01780393.mRNA | mRNA | upstream | 278120 | 1765035 ~ 1782414 (+) | True | CI01000051_01765268_01780393 |
| CI01000051_01669393_01716229.mRNA | mRNA | upstream | 343266 | 1669326 ~ 1717268 (+) | True | CI01000051_01669393_01716229 |
| CI01000051_02280290_02283028.mRNA | mRNA | downstream | 214601 | 2280290 ~ 2283368 (+) | True | CI01000051_02280290_02283028 |
| CI01000051_02285060_02291993.mRNA | mRNA | downstream | 218450 | 2284139 ~ 2292273 (+) | True | CI01000051_02285060_02291993 |
| CI01000051_02332216_02342649.mRNA | mRNA | downstream | 266527 | 2332216 ~ 2343213 (+) | False | CI01000051_02332216_02342649 |
| CI01000051_03014282_03014572.mRNA | mRNA | downstream | 947988 | 3013677 ~ 3014761 (+) | True | CI01000051_03014282_03014572 |
| CI01000051_03022303_03035625.mRNA | mRNA | downstream | 955805 | 3021494 ~ 3035855 (+) | True | CI01000051_03022303_03035625 |
| TU246453 | other | upstream | 1335830 | 720772 ~ 724704 (+) | True | G217248 |
| TU246451 | other | upstream | 1378416 | 637590 ~ 682118 (+) | False | CI01000051_00638200_00720543 |
| TU246252 | other | upstream | 1676406 | 324465 ~ 384128 (+) | False | G217075 |
| TU248359 | other | downstream | 1179754 | 3245443 ~ 3246873 (+) | True | G218981 |
| TU249085 | other | downstream | 2308721 | 4374410 ~ 4375330 (+) | True | CI01000051_04374052_04393328 |
| TU249308 | other | downstream | 2849285 | 4914974 ~ 5049810 (+) | False | G219803 |
| TU249297 | other | downstream | 2879269 | 4944958 ~ 5049810 (+) | False | G219803 |
| TU249302 | other | downstream | 2893740 | 4959429 ~ 5049810 (+) | False | G219803 |
