RNA id: CI01000051_03443548_03451188.mRNA



Basic Information


Item Value
RNA id CI01000051_03443548_03451188.mRNA
length 1238
RNA type mRNA
GC content 0.43
exon number 2
gene id CI01000051_03443548_03451188
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3443548 ~ 3451814 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CAGTCGCAGTTATCTCATTACCCAGAAAGGAAGATAGACGAGTTCCGTCTGCATATCGAAGAACTCGAGAGAGAATACAAACGCTACCTGAAAAAACTACGCTCCCTAGACCCCACCTGCAAACACAAGCCTTGGGAACCTCGAGCATACACCAAGAGGAGGCAGGAGCCAAGCCATCAAAACACCTCCAAAAAACTGTGCCTCCACAGCAGAGAAGAGGATGTTATTGAGGACACCAACACCGAGGCAGCAGGAAACCACACATCTCTCACTAATGTACAAGAACTTCCCTCCCCATCAGCTCCTGTTTCCACCCAAGCCTCTGATCTCCCTGACCAGGACCTCCCGCTGTGCTTCGATCAGGCCCGGCTTGCGGTGGCGGTGGCCAGTTCACGTGTGGCTCTCACTGGGCAGCAGCAGGACACAGGTACGCTGACACGAGTGTTGCTCACCGGCCTGCCCAACCTCCACAGCCTCCCGCTAGCACAGGCAGCAGCAAACGAAGGAACGCGGCAGCCTTCGAATGCTGAAACAGACCAGAGTAAAACCAAACATTTACCGGGACTCGGCTGCTACTCGTCGTCCTCCGATGAGGAAAATATAGCTGACTGAAATTTCAGTTTGTGAAATTTCATCATGCTTATTTGATGATGTTTTTATTTTATTTTGTTGTTGGTTAAATACATGGTGCTAAGACATTTAACATTTGATATTCATAATGTCACTTAAATATTTTCACATTTGGTGCGTGAAACTGAAACTTGAAAGTAAAAAATTCCATTTGAAACCTGAAAGCTGTAAATCACCTGTGTTTGTGTGTTTATATTATTTGTCTTAACCTAGAATATTCCAGCTGTGAATGTGTGAATTAAGCAGTGTTAGAGTCCCAAGATCTGAAAGGAAATGGTTGAGGTGTGGTTAGAGTAGAATTCTGAATGGGAATTAGTGATTGGTTGTTGTCATAAACAGAAAGTAGGAAGTGTTTACTTTTACATAAGTTTATCTAAGGAGTACATCTCCTTCGGTGTCTATATGGTTTCAATTTCAACCACAAGATATTTTACAGATTGATGCCATGAGAGACACCTTTTAAGTTGCACGACGAACATTTTATTCTCGTTCTTTACAAAATCAATCATGTTCTGGTGCTTTAAAAGATAAAGAAAACAAACACTGATTTGAAGAACTGATAATGTAATGCTTAATCATTAAAACAGTCAACTCAAGAACCATATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU248482 lncRNA upstream 69423 3373888 ~ 3374125 (+) True G219070
TU248464 lncRNA upstream 107774 3335530 ~ 3335774 (+) True G219052
TU248462 lncRNA upstream 116887 3326054 ~ 3326661 (+) True G219050
TU248460 lncRNA upstream 120578 3322672 ~ 3322970 (+) True G219048
TU248448 lncRNA upstream 147004 3295998 ~ 3296544 (+) True G219045
TU248576 lncRNA downstream 83946 3535760 ~ 3536015 (+) True G219163
TU248567 lncRNA downstream 85373 3537187 ~ 3537679 (+) True G219154
TU248616 lncRNA downstream 123352 3575166 ~ 3576838 (+) True G219191
TU248620 lncRNA downstream 128400 3580214 ~ 3580535 (+) True G219194
TU248634 lncRNA downstream 141286 3593100 ~ 3593330 (+) True G219203
CI01000051_03435613_03439371.mRNA mRNA upstream 3697 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03431193_03432454.mRNA mRNA upstream 10760 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03147600_03152676.mRNA mRNA upstream 290454 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03128080_03133290.mRNA mRNA upstream 310227 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03107566_03109607.mRNA mRNA upstream 333818 3107566 ~ 3109730 (+) True CI01000051_03107566_03109607
CI01000051_03457204_03459579.mRNA mRNA downstream 5145 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03679568_03682342.mRNA mRNA downstream 227623 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03687377_03698806.mRNA mRNA downstream 235510 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03800655_03819155.mRNA mRNA downstream 348841 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_04038453_04045552.mRNA mRNA downstream 586593 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
TU248359 other upstream 196675 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1377465 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1377859 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 922596 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1463160 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1493144 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1507615 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1566491 5018305 ~ 5052033 (+) False G219803

Expression Profile