RNA id: CI01000051_05174862_05175926.mRNA


Basic Information

Item Value
RNA id CI01000051_05174862_05175926.mRNA
length 2400
RNA type mRNA
GC content 0.39
exon number 1
gene id CI01000051_05174862_05175926
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5174108 ~ 5176507 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTATAAGAGCGCCTGTCTGATCTCACCACTATCTAGTTGGAGGAGATTCAGCCAGACAACACATCAGAAGTGAACGGATAGGGACTCTGGATCTATAATCTGGAGCTGTCACTTAACATGAAAGGTAGGTGAAATTCTTACCAGTCATCAGGACTTTAATAATAATGGTTATATTCAAACAGCACAAGTTACATCAATAACTTCATCACTAATCACAGTAACAGGTTATGCTAATGTTGGAAAGAGACTTTAATGTTATTGAATTTAATATGGAGATGAAACATTATAAATCAGAATACACAACTGAGATCAACTATTTTCAATACATTTTGCTAATAGTCCGAAAATGTGTAAGAATGTTACATAACCTACTGAAATTACTTGGTATTTTCAAGTTTTACTCAGTCAGATAGATCAGATCCAGCAAATGACTCCCCTTCATTCCTTGAGTTGGATAAGTTGTTGTTGTTTTAGTTGCCAAACATGAAGGTAACTTTAAACATCACCAATTCAGGAATAAACAGCAGGAATTTGTGATTATCCTGAACATAAATTTACACTGTAGATGATAGTCATCCATTTTACATGAAAACACCATTTTAGTCGTTCTACTTCAAAGATTCTTGTTTAATTTAATGTTAACCACTGCTTCTTTGTAATAACTTGTGAAATTTACTAGCAATTTCTGAGTGAAAATTGTTTCAAAGTAAATGTTAAAAGTAAAAAAAATATATCTTTTTTACAGTGTCCCAATGGAACTAAATTCATCGAATGTCCTCTGCAATGAAACAGACGCCTGGATATGGCTGTCTTCTCTCCAGCCTCCATTTCTGGCTCTTATCAGCATCCTGGGAGTGGTGGGCAACAGTCTGGTCCTCTGCGTGTTCTGTCTCCAGAGGAAGCCGTGCAGCGTAGCTGATGTGTATCTGGGCAACCTGGCAGCTGCAGACCTCATTATGGTCCTCTGTTTGCCCTTCTGGGCGGTCACTATTGCCCGAAACTATCAGTGGAACTTTGGTCAACTGCTCTGCAAGGTGATCAACACCGCCATCTCGATGAACTACTACTGCAGCGTACTCTTCCTAGTGCTAGTCAGTGTGGACCGCTACCTCGCTCTGGCCAAACCCCTGACTTCCAGTAGGCTGAGATGCCCCAAATGGGCCAAGCGTATCTGTGTGGTGATTTGGGCGGTTGGATTCACCCTCAGCCTCCCAGCAATGATCTTCCGAGGAGTAAAATTCGTTCCAGTCGTAGAGGTGGAAGCCTGCTACCTTTTGTACCCTCATCCGGCCTGGGTGCTCCAACGGAACATTACGATGAACTTGATTGGATTCCTGGTTCCCCTGCCGATCATTTCGCTTTGCACCTTTCACATTGTCAAGGCACTTAAAAATCGTGGTGTCGTGATTTTACCGAGGGTGCAGACGGAGAGGAAGGCTGCTCATCTGGTTCTGACGGTCCTCGCGGTGTTTCTCCTGTGCTGGACACCCTTCCAGCTACTGCGGTTTCTAAACACTCTTGACTACTTTAATCTCCTTCCTGGGTGCCTCTGGGAGAACATGTTACAAATAGGCAATGAGCTGTCTACTTATTTAGGGTATAGCAATAGCTCAATTAACCCTTTCTTGTATGTTATCGTAGGGAGTCAATTCCGAAAGAGAGCTCGAGGAGTTTTTTGGAGTCTTTTGCATCCTAGACGGAAGAGCAACTCCTCTGTGCTCACAAACGTTACTGTTATTAGCAAGTGCGGTGACAGTCCCAAAGACAACAAAATAACACCGCTGACTGTGAGCTGTATAGTGTGTAAATCATTATGAAGATACAAAGAAACTCAAATGGTGGACATTCGATTCCCAGGAGAAACATATATACCTCTTATTTGTTTGACTGTGCAATCCCGTTTTCCTTCTCTCGCATCTATTCTTTCCATCTTAGCTGAGGTGTGGAAAGAATGAGATGCGAGGATGAAGGAATTGGTGGAATATTCAAGTGTCACGTCAATAATTACTGATGATTTTGCACTAAAATGTTTTGAAAATACTTTTGTAAAGGTATAATAACATCTGTGGACTGATGTGTTTGGTTTTAATATTATTAGTGAACTGAAAGTGTGTATTTTATTGTTAATCTTTTACAGTTAATTACAACATTTCATTTTCATGAAAGCAAATGTATTGTTTTTTAAAACTAAAACCAAGGAGTATATTCAAAACCAAAGCTGTTTTTAAATATATAATGTATATATTTAATGTATATTTGTATCATTGTACTTTGTGTTATATTAATAAAAATAATTAAAACTGGCTATTTAAATACTGTGATAAAACATTACCTTGTACTGCTTTAATACCTTGCTGTGCTGTTATGTTTATGTAGCTGGTTAAACAAGATATTTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU249409 lncRNA upstream 29226 5144671 ~ 5144882 (+) True G219895
TU249314 lncRNA upstream 43924 5107938 ~ 5108192 (+) True G219805
TU249395 lncRNA upstream 68961 5104922 ~ 5105147 (+) True G219881
TU249394 lncRNA upstream 70352 5103527 ~ 5103756 (+) True G219880
TU249391 lncRNA upstream 77908 5095978 ~ 5096200 (+) True G219877
TU250306 lncRNA downstream 831 5177338 ~ 5177567 (+) True G220701
TU250331 lncRNA downstream 22267 5198774 ~ 5198997 (+) True G220725
TU250332 lncRNA downstream 22898 5199405 ~ 5199684 (+) True G220726
TU250333 lncRNA downstream 25902 5202409 ~ 5202751 (+) True G220727
TU250336 lncRNA downstream 28919 5205426 ~ 5205628 (+) True G220730
CI01000051_05126681_05142536.mRNA mRNA upstream 31491 5125751 ~ 5142617 (+) False CI01000051_05126681_05142536
CI01000051_05072860_05074568.mRNA mRNA upstream 99234 5072629 ~ 5074874 (+) True CI01000051_05072860_05074568
CI01000051_04796878_04799272.mRNA mRNA upstream 374787 4796878 ~ 4799321 (+) True CI01000051_04796878_04799272
CI01000051_04763063_04778692.mRNA mRNA upstream 395026 4762496 ~ 4779082 (+) True CI01000051_04763063_04778692
CI01000051_04419475_04464134.mRNA mRNA upstream 709942 4419270 ~ 4464166 (+) True CI01000051_04419475_04464134
CI01000051_05254556_05270993.mRNA mRNA downstream 78049 5254556 ~ 5271828 (+) True CI01000051_05254556_05270993
CI01000051_05296858_05301152.mRNA mRNA downstream 120177 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
CI01000051_05314994_05317995.mRNA mRNA downstream 137937 5314444 ~ 5318185 (+) True CI01000051_05314994_05317995
CI01000051_05320361_05322570.mRNA mRNA downstream 143854 5320361 ~ 5323905 (+) True CI01000051_05320361_05322570
CI01000051_05401881_05405868.mRNA mRNA downstream 225374 5401881 ~ 5405886 (+) True CI01000051_05401881_05405868
TU249310 other upstream 122075 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 124298 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 124298 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 124298 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 124298 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1649292 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 2165534 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 2233016 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2929136 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 3166435 8342942 ~ 8343448 (+) True G222727

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035379 True 1096 mRNA 0.47 1 NC_007131.7 10287061 ~ 10288156 (-)