RNA id: CI01000051_05757566_05757955.mRNA


Basic Information

Item Value
RNA id CI01000051_05757566_05757955.mRNA
length 503
RNA type mRNA
GC content 0.46
exon number 2
gene id CI01000051_05757566_05757955
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 5757566 ~ 5758141 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTGTTCTCAGTGAGGTGATCCAGGCTTTCTCTGTGCCTGAGAACGCCGCCCGCATGGAGGAAGCCAGAGAAAGCGCCTGCAATGACATGGGCAAGATGCTGCAGCTCGTGCTTCCCGTAGCCACTCAGATCCAACAGGAGGTCATCAAAGCATATGGCTTCAACAATGAGGGAGAAGGTGTTCTCAAATTCGCCCGGCTGGTAAAGATGTATGAAACTCAGGACCCAGAGATCGCAGCCATGTCAGTGAAACTCAAGAGTCTCCTACTGCCGCCTCTCTCCACTCCTCCCATTGGCAGTGGCATCCCGACCTCATAGAACAAGCCCAAACTCCCCGTTCATAAAGTTCAAAACCGTTTCAACTATAAAAATTGTATAGTGCGAACACATTTAGGGTATCCAAAATATGATCTAGATTTTAGTCTGTTTTAACACTTCTTTCAAGGGTCATTTAAACTGAGGTGAAGTGAATTTTCTCAGACCACAGAAAAAATATTTAAGTTA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU250559 lncRNA upstream 13101 5741058 ~ 5744465 (+) True G220916
TU250579 lncRNA upstream 17395 5739579 ~ 5740171 (+) True G220930
TU250571 lncRNA upstream 80603 5676464 ~ 5676963 (+) True G220922
TU250513 lncRNA upstream 185829 5571458 ~ 5571737 (+) True G220889
TU250485 lncRNA upstream 234780 5521857 ~ 5522786 (+) True G220861
TU250572 lncRNA downstream 31387 5789528 ~ 5830106 (+) True G220923
TU250569 lncRNA downstream 187449 5945590 ~ 5946344 (+) True G220920
TU250649 lncRNA downstream 231665 5989806 ~ 5990114 (+) True G220983
TU250633 lncRNA downstream 257032 6015173 ~ 6016182 (+) True G220967
TU250659 lncRNA downstream 261180 6019321 ~ 6019757 (+) False G220991
CI01000051_05712567_05728993.mRNA mRNA upstream 27875 5712567 ~ 5729691 (+) True CI01000051_05712567_05728993
CI01000051_05657394_05672861.mRNA mRNA upstream 83364 5657394 ~ 5674202 (+) True CI01000051_05657394_05672861
CI01000051_05588671_05593438.mRNA mRNA upstream 163589 5588292 ~ 5593977 (+) True CI01000051_05588671_05593438
CI01000051_05579061_05584087.mRNA mRNA upstream 173479 5579061 ~ 5584087 (+) True CI01000051_05579061_05584087
CI01000051_05523573_05525861.mRNA mRNA upstream 230559 5523362 ~ 5527007 (+) True CI01000051_05523573_05525861
CI01000051_05831209_05933202.mRNA mRNA downstream 73068 5831209 ~ 5933637 (+) True CI01000051_05831209_05933202
CI01000051_05935542_05939529.mRNA mRNA downstream 177302 5935443 ~ 5939632 (+) True CI01000051_05935542_05939529
CI01000051_05955881_05966250.mRNA mRNA downstream 197276 5955417 ~ 5966425 (+) True CI01000051_05955881_05966250
CI01000051_05969849_05970699.mRNA mRNA downstream 211708 5969849 ~ 5971469 (+) True CI01000051_05969849_05970699
CI01000051_05996289_06007664.mRNA mRNA downstream 237854 5995995 ~ 6008558 (+) True CI01000051_05996289_06007664
TU249310 other upstream 705533 5018305 ~ 5052033 (+) False G219803
TU249308 other upstream 707756 4914974 ~ 5049810 (+) False G219803
TU249297 other upstream 707756 4944958 ~ 5049810 (+) False G219803
TU249302 other upstream 707756 4959429 ~ 5049810 (+) False G219803
TU249300 other upstream 707756 5045115 ~ 5049810 (+) False G219803
TU250885 other downstream 1067658 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 1583900 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 1651382 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 2347502 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 2584801 8342942 ~ 8343448 (+) True G222727

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00035423 False 948 mRNA 0.43 4 NC_007131.7 14459183 ~ 14462995 (-)
bowfin (Amia calva) AMCG00004029 True 369 mRNA 0.59 3 CM030121.1 30201188 ~ 30202790 (+)