RNA id: TU247425


Basic Information

Item Value
RNA id TU247425
length 269
lncRNA type intronic
GC content 0.44
exon number 2
gene id G218118
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 2052554 ~ 2053150 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGGATTCGGACAAGCCCTAAAGTGCACCTGTGCCATGTGCTGCAGACCATGCGCTTAGATTGTTAAAATAGGGCCCAGAGAGAGAGAGAGAGAGAGAGAGAGAAAATGACCTGAGTCTGTGCGTCAGTGTTCGGCAGCAGCGTTTCTACTAATAGCAAAACTGTAAGTTTATCTGCTTCAAGAACAGCACTGTTATTACCTCACTACTGAGAAATGTCATGTAGATTTTAAGTTGCTAAACTATTTTAGTTTGAGTGGGAGAGAGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247402 lncRNA upstream 30060 2021995 ~ 2022494 (+) True G218103
TU247257 lncRNA upstream 49390 1993373 ~ 2003164 (+) True G217968
TU247255 lncRNA upstream 89911 1961104 ~ 1962643 (+) True G217966
TU247389 lncRNA upstream 107452 1944870 ~ 1945102 (+) True G218090
TU247369 lncRNA upstream 168184 1884045 ~ 1884370 (+) True G218070
TU247436 lncRNA downstream 22266 2075416 ~ 2075640 (+) True G218129
TU247464 lncRNA downstream 68130 2121280 ~ 2121584 (+) True G218149
TU247466 lncRNA downstream 68772 2121922 ~ 2179525 (+) True G218150
TU247513 lncRNA downstream 151662 2204812 ~ 2205133 (+) True G218197
TU247516 lncRNA downstream 155380 2208530 ~ 2208788 (+) True G218200
CI01000051_01976321_01985259.mRNA mRNA upstream 66395 1976080 ~ 1986159 (+) True CI01000051_01976321_01985259
CI01000051_01965924_01969562.mRNA mRNA upstream 82952 1965703 ~ 1969602 (+) True CI01000051_01965924_01969562
CI01000051_01945810_01948306.mRNA mRNA upstream 104068 1945810 ~ 1948486 (+) True CI01000051_01945810_01948306
CI01000051_01765268_01780393.mRNA mRNA upstream 270140 1765035 ~ 1782414 (+) True CI01000051_01765268_01780393
CI01000051_01669393_01716229.mRNA mRNA upstream 335286 1669326 ~ 1717268 (+) True CI01000051_01669393_01716229
CI01000051_02060996_02061735.mRNA mRNA downstream 7846 2060996 ~ 2062355 (+) False CI01000051_02060996_02061735
CI01000051_02280290_02283028.mRNA mRNA downstream 227140 2280290 ~ 2283368 (+) True CI01000051_02280290_02283028
CI01000051_02285060_02291993.mRNA mRNA downstream 230989 2284139 ~ 2292273 (+) True CI01000051_02285060_02291993
CI01000051_02332216_02342649.mRNA mRNA downstream 279066 2332216 ~ 2343213 (+) False CI01000051_02332216_02342649
CI01000051_03014282_03014572.mRNA mRNA downstream 960527 3013677 ~ 3014761 (+) True CI01000051_03014282_03014572
TU246453 other upstream 1327850 720772 ~ 724704 (+) True G217248
TU246451 other upstream 1370436 637590 ~ 682118 (+) False CI01000051_00638200_00720543
TU246252 other upstream 1668426 324465 ~ 384128 (+) False G217075
TU247404 other downstream 6837 2059987 ~ 2065689 (+) False G218104
TU247409 other downstream 6837 2059987 ~ 2065689 (+) True G218104
TU247403 other downstream 7384 2060534 ~ 2065689 (+) False G218104
TU247406 other downstream 7384 2060534 ~ 2065689 (+) False G218104
TU247407 other downstream 7384 2060534 ~ 2066083 (+) False G218104

Expression Profile