RNA id: TU248432


Basic Information

Item Value
RNA id TU248432
length 475
lncRNA type antisense_over
GC content 0.49
exon number 1
gene id G219040
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3220173 ~ 3224648 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTCATTTTTGGGTGAACTAACCCTTTAACTTCTCAGTGAAGGTGTCCAATCATGCTTTGCAACATGACCGGAGACAACCAGAGAACCTCAACCAAATTATATTGCCAGTAGCCCATGAAGAAACCAAACACGACATCCGTTACATTATGGCGTCCAAGGAGAACCCTGGAAAAACCAACAAAAGAGGCCCAGAGCAGGACAAGAACACGGAGCGGGGCCGCCAGCACCAGATGCGCCAACAGAAAGCGGGCACACATTGCAGCACGTGTGGCATGGCCTGATGGGAAGGAATAGCGGTCCACAGAAAATGTGGCAAACATGTCCATACGGTTATGGGCAGGACGTCGGCGCCGCACTACAGCCTTCACCACGCCGACCAGGACCAGGTCCAGTACCAAGGCTGAAATAGAAAATGACATATATGTAAGAAAAACTGGACAGCTGAGAAATTGTTGGATTAGATTGAAGTGAGGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248429 lncRNA upstream 61 3220173 ~ 3224113 (+) False G219040
TU248433 lncRNA upstream 61 3223865 ~ 3224113 (+) False G219040
TU248426 lncRNA upstream 393 3220173 ~ 3223781 (+) False G219040
TU248427 lncRNA upstream 2323 3220173 ~ 3221851 (+) False G219040
TU248415 lncRNA upstream 26876 3196985 ~ 3197298 (+) True G219029
TU248434 lncRNA downstream 7114 3231762 ~ 3232556 (+) False G219041
TU248436 lncRNA downstream 7207 3231855 ~ 3232556 (+) True G219041
TU248439 lncRNA downstream 11040 3235688 ~ 3236042 (+) True G219043
TU248440 lncRNA downstream 11540 3236188 ~ 3236417 (+) True G219044
TU248333 lncRNA downstream 12202 3236850 ~ 3244568 (+) False G218956
CI01000051_03147600_03152676.mRNA mRNA upstream 71080 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03128080_03133290.mRNA mRNA upstream 90853 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03107566_03109607.mRNA mRNA upstream 114444 3107566 ~ 3109730 (+) True CI01000051_03107566_03109607
CI01000051_03038457_03041581.mRNA mRNA upstream 181441 3036852 ~ 3042733 (+) True CI01000051_03038457_03041581
CI01000051_03022303_03035625.mRNA mRNA upstream 188319 3021494 ~ 3035855 (+) True CI01000051_03022303_03035625
CI01000051_03431193_03432454.mRNA mRNA downstream 205643 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03435613_03439371.mRNA mRNA downstream 210965 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03443548_03451188.mRNA mRNA downstream 218900 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_03457204_03459579.mRNA mRNA downstream 232311 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03679568_03682342.mRNA mRNA downstream 454789 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
TU247407 other upstream 1158091 2060534 ~ 2066083 (+) False G218104
TU247404 other upstream 1158485 2059987 ~ 2065689 (+) False G218104
TU248359 other downstream 20795 3245443 ~ 3246873 (+) True G218981
TU249085 other downstream 1149762 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1690326 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1720310 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1734781 4959429 ~ 5049810 (+) False G219803

Expression Profile