RNA id: TU248440


Basic Information

Item Value
RNA id TU248440
length 230
lncRNA type inter_gene
GC content 0.33
exon number 1
gene id G219044
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3236188 ~ 3236417 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTCATATGTCATAACATCAGTGGTTTGTGTTGTCTAAAAAAGACTAGGAGAAGAAAAAGAGGTCAGACGCTGATTCTTAAAGAACGGCCTCTCCGGTGTTAGATAACTTGCTGTTATAGCACCTCCTGCAGACAAACGCTTGTAACCTAAGTGTTGACTATAATTTTATTTAATTTTATTTCTTTATTTAGTGTATTGTATGTAAACTACTTAACCTGTAATTAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248439 lncRNA upstream 146 3235688 ~ 3236042 (+) True G219043
TU248434 lncRNA upstream 3632 3231762 ~ 3232556 (+) False G219041
TU248436 lncRNA upstream 3632 3231855 ~ 3232556 (+) True G219041
TU248432 lncRNA upstream 11540 3224174 ~ 3224648 (+) True G219040
TU248428 lncRNA upstream 11631 3224174 ~ 3224557 (+) False G219040
TU248333 lncRNA downstream 433 3236850 ~ 3244568 (+) False G218956
TU248332 lncRNA downstream 7419 3243836 ~ 3244568 (+) True G218956
TU248443 lncRNA downstream 59581 3295998 ~ 3296356 (+) False G219045
TU248448 lncRNA downstream 59581 3295998 ~ 3296544 (+) True G219045
TU248460 lncRNA downstream 86255 3322672 ~ 3322970 (+) True G219048
CI01000051_03147600_03152676.mRNA mRNA upstream 83094 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03128080_03133290.mRNA mRNA upstream 102867 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03107566_03109607.mRNA mRNA upstream 126458 3107566 ~ 3109730 (+) True CI01000051_03107566_03109607
CI01000051_03038457_03041581.mRNA mRNA upstream 193455 3036852 ~ 3042733 (+) True CI01000051_03038457_03041581
CI01000051_03022303_03035625.mRNA mRNA upstream 200333 3021494 ~ 3035855 (+) True CI01000051_03022303_03035625
CI01000051_03431193_03432454.mRNA mRNA downstream 193874 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03435613_03439371.mRNA mRNA downstream 199196 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03443548_03451188.mRNA mRNA downstream 207131 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_03457204_03459579.mRNA mRNA downstream 220542 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03679568_03682342.mRNA mRNA downstream 443020 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
TU247407 other upstream 1170105 2060534 ~ 2066083 (+) False G218104
TU247404 other upstream 1170499 2059987 ~ 2065689 (+) False G218104
TU248359 other downstream 9026 3245443 ~ 3246873 (+) True G218981
TU249085 other downstream 1137993 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1678557 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1708541 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1723012 4959429 ~ 5049810 (+) False G219803

Expression Profile