RNA id: TU248332


Basic Information

Item Value
RNA id TU248332
length 489
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id G218956
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3236850 ~ 3244568 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGCTAAACAGGTTTATTTGTACCAGCTCTCACCACATTTATTTTATTTCAGGTGTTTGTGGTTGGGCCTGATAAGAGGCTGAAGCTGTCTATTCTCTATCCAGCCACCACGGGGCGCAATTTCGATGAGATTCTCCGTGCTATAGACTCTCTGCAGTTGACGGCAACAAAGAAGGTGGCCACACCTGTGGACTGGAAGCCCGGTGAAGAAGTCATGGTCATTCCTTCTCTCTCAGATGAAGACGCCAACAAGCTTTTCCCAGCTGGTTTTACCCTCAAAGAGGTGCCTTCTGGGAAAAAATACATTCGCTACACTAAACCATAACTGATAACCTATATGATGACAATACTGTAGAAATGGCACTTTACTGACATCGTGTTTTAGTCCACTTGATGTGGCGTGTTCATTCGCTTGACTTCTCCCATCACCTGCTACTAACCAGAGACGAATCATCAGAAGTTAGTTCATAAAGTGACACATCATAAGGTC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248440 lncRNA upstream 7419 3236188 ~ 3236417 (+) True G219044
TU248439 lncRNA upstream 7794 3235688 ~ 3236042 (+) True G219043
TU248434 lncRNA upstream 11280 3231762 ~ 3232556 (+) False G219041
TU248436 lncRNA upstream 11280 3231855 ~ 3232556 (+) True G219041
TU248432 lncRNA upstream 19188 3224174 ~ 3224648 (+) True G219040
TU248443 lncRNA downstream 51430 3295998 ~ 3296356 (+) False G219045
TU248448 lncRNA downstream 51430 3295998 ~ 3296544 (+) True G219045
TU248460 lncRNA downstream 78104 3322672 ~ 3322970 (+) True G219048
TU248462 lncRNA downstream 81486 3326054 ~ 3326661 (+) True G219050
TU248464 lncRNA downstream 90962 3335530 ~ 3335774 (+) True G219052
CI01000051_03147600_03152676.mRNA mRNA upstream 90742 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03128080_03133290.mRNA mRNA upstream 110515 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03107566_03109607.mRNA mRNA upstream 134106 3107566 ~ 3109730 (+) True CI01000051_03107566_03109607
CI01000051_03038457_03041581.mRNA mRNA upstream 201103 3036852 ~ 3042733 (+) True CI01000051_03038457_03041581
CI01000051_03022303_03035625.mRNA mRNA upstream 207981 3021494 ~ 3035855 (+) True CI01000051_03022303_03035625
CI01000051_03431193_03432454.mRNA mRNA downstream 185723 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03435613_03439371.mRNA mRNA downstream 191045 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03443548_03451188.mRNA mRNA downstream 198980 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_03457204_03459579.mRNA mRNA downstream 212391 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03679568_03682342.mRNA mRNA downstream 434869 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
TU247407 other upstream 1177753 2060534 ~ 2066083 (+) False G218104
TU247404 other upstream 1178147 2059987 ~ 2065689 (+) False G218104
TU248359 other downstream 875 3245443 ~ 3246873 (+) True G218981
TU249085 other downstream 1129842 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1670406 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1700390 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1714861 4959429 ~ 5049810 (+) False G219803

Expression Profile