RNA id: TU248460


Basic Information

Item Value
RNA id TU248460
length 299
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G219048
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3322672 ~ 3322970 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGATGTTAAACCTCAGATCAGGCTGGAGCCATGGCCTAGCATTGAGCCATGGTTCTCATTTGGGAAATCTAGGTTCAAATCTAGGTTCCATATTTACTTCTCAACTCTCTACTTTTCCTTTTCTACTTTCAAATTGTTATATTCCTTCTTAATGAGCCAGATTAAAGAACTAATAATAATAATAAAAAAATCTGGATCAACCTAAGAAGCTTAGAAATATTTTTAGCACTCTATCTTTCCAATTGAACAACATATATCACTAGCCCGGAGGATACTAATCCAAGTCCTGAAGCGCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248448 lncRNA upstream 26128 3295998 ~ 3296544 (+) True G219045
TU248443 lncRNA upstream 26316 3295998 ~ 3296356 (+) False G219045
TU248333 lncRNA upstream 78104 3236850 ~ 3244568 (+) False G218956
TU248332 lncRNA upstream 78104 3243836 ~ 3244568 (+) True G218956
TU248440 lncRNA upstream 86255 3236188 ~ 3236417 (+) True G219044
TU248462 lncRNA downstream 3084 3326054 ~ 3326661 (+) True G219050
TU248464 lncRNA downstream 12560 3335530 ~ 3335774 (+) True G219052
TU248482 lncRNA downstream 50918 3373888 ~ 3374125 (+) True G219070
TU248576 lncRNA downstream 212790 3535760 ~ 3536015 (+) True G219163
TU248567 lncRNA downstream 214217 3537187 ~ 3537679 (+) True G219154
CI01000051_03147600_03152676.mRNA mRNA upstream 169578 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03128080_03133290.mRNA mRNA upstream 189351 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03107566_03109607.mRNA mRNA upstream 212942 3107566 ~ 3109730 (+) True CI01000051_03107566_03109607
CI01000051_03038457_03041581.mRNA mRNA upstream 279939 3036852 ~ 3042733 (+) True CI01000051_03038457_03041581
CI01000051_03022303_03035625.mRNA mRNA upstream 286817 3021494 ~ 3035855 (+) True CI01000051_03022303_03035625
CI01000051_03431193_03432454.mRNA mRNA downstream 107321 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03435613_03439371.mRNA mRNA downstream 112643 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03443548_03451188.mRNA mRNA downstream 120578 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_03457204_03459579.mRNA mRNA downstream 133989 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03679568_03682342.mRNA mRNA downstream 356467 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
TU248359 other upstream 75799 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1256589 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1256983 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 1051440 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1592004 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1621988 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1636459 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1695335 5018305 ~ 5052033 (+) False G219803

Expression Profile