RNA id: TU248464


Basic Information

Item Value
RNA id TU248464
length 245
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G219052
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3335530 ~ 3335774 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGCCCAGTCTGTTTTGATTGGTCTACAGCTTACAGCGTCTGACGGAAGCGAAATATCTATTACCATATCTGAATTTCAGCTCTTCCTCAGCGCTTGATACACAGTGATACGAATAATGGCGTCGGTTTTTCCGTATCAATTTCTGTGCGAGTCCTCATCCTTTTGAAGTGCATCAAAGTGGATTCGCAGCGCTGAAAACAGCGTCTTCTCAACATGTCGACAACACAAACCAAACTCTCCCAGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248462 lncRNA upstream 8869 3326054 ~ 3326661 (+) True G219050
TU248460 lncRNA upstream 12560 3322672 ~ 3322970 (+) True G219048
TU248448 lncRNA upstream 38986 3295998 ~ 3296544 (+) True G219045
TU248443 lncRNA upstream 39174 3295998 ~ 3296356 (+) False G219045
TU248333 lncRNA upstream 90962 3236850 ~ 3244568 (+) False G218956
TU248482 lncRNA downstream 38114 3373888 ~ 3374125 (+) True G219070
TU248576 lncRNA downstream 199986 3535760 ~ 3536015 (+) True G219163
TU248567 lncRNA downstream 201413 3537187 ~ 3537679 (+) True G219154
TU248616 lncRNA downstream 239392 3575166 ~ 3576838 (+) True G219191
TU248620 lncRNA downstream 244440 3580214 ~ 3580535 (+) True G219194
CI01000051_03147600_03152676.mRNA mRNA upstream 182436 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03128080_03133290.mRNA mRNA upstream 202209 3128080 ~ 3133321 (+) True CI01000051_03128080_03133290
CI01000051_03107566_03109607.mRNA mRNA upstream 225800 3107566 ~ 3109730 (+) True CI01000051_03107566_03109607
CI01000051_03038457_03041581.mRNA mRNA upstream 292797 3036852 ~ 3042733 (+) True CI01000051_03038457_03041581
CI01000051_03022303_03035625.mRNA mRNA upstream 299675 3021494 ~ 3035855 (+) True CI01000051_03022303_03035625
CI01000051_03431193_03432454.mRNA mRNA downstream 94517 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03435613_03439371.mRNA mRNA downstream 99839 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03443548_03451188.mRNA mRNA downstream 107774 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_03457204_03459579.mRNA mRNA downstream 121185 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03679568_03682342.mRNA mRNA downstream 343663 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
TU248359 other upstream 88657 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1269447 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1269841 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 1038636 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1579200 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1609184 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1623655 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1682531 5018305 ~ 5052033 (+) False G219803

Expression Profile