RNA id: TU248634


Basic Information

Item Value
RNA id TU248634
length 231
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G219203
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3593100 ~ 3593330 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCGGGTCTTTGCGAACGGTCAGTTACGTAATAGGTAGGTGTGGCTCTGAGACTCTGCCTTCTTTGACGTGGAAATCATCTCCGGTTCATTTCTTCTGTTCAGTCCGTCGAGGTCCGATGCAAGTAAATACATGAACACCATGGAGAGCTGCTTTACAGTAGAAATTGAAGGCTGCTGTCACTTTAAAACCTCATGTATGGATCTAATATCCACCTTTTTCCTACACCCCAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248620 lncRNA upstream 12565 3580214 ~ 3580535 (+) True G219194
TU248616 lncRNA upstream 16262 3575166 ~ 3576838 (+) True G219191
TU248567 lncRNA upstream 55421 3537187 ~ 3537679 (+) True G219154
TU248576 lncRNA upstream 57085 3535760 ~ 3536015 (+) True G219163
TU248482 lncRNA upstream 218975 3373888 ~ 3374125 (+) True G219070
TU248623 lncRNA downstream 2069 3595399 ~ 3596158 (+) False G219195
TU248625 lncRNA downstream 2069 3595399 ~ 3596158 (+) False G219195
TU248621 lncRNA downstream 2441 3595771 ~ 3596273 (+) False G219195
TU248622 lncRNA downstream 2441 3595771 ~ 3596158 (+) False G219195
TU248624 lncRNA downstream 2441 3595771 ~ 3596234 (+) True G219195
CI01000051_03457204_03459579.mRNA mRNA upstream 133176 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03443548_03451188.mRNA mRNA upstream 141286 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_03435613_03439371.mRNA mRNA upstream 153249 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03431193_03432454.mRNA mRNA upstream 160312 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03147600_03152676.mRNA mRNA upstream 440006 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03679568_03682342.mRNA mRNA downstream 86107 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03687377_03698806.mRNA mRNA downstream 93994 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03800655_03819155.mRNA mRNA downstream 207325 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_04038453_04045552.mRNA mRNA downstream 445077 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_04071144_04075444.mRNA mRNA downstream 477814 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
TU248359 other upstream 346227 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1527017 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1527411 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 781080 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1321644 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1351628 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1366099 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1424975 5018305 ~ 5052033 (+) False G219803

Expression Profile