RNA id: TU248625


Basic Information

Item Value
RNA id TU248625
length 390
lncRNA type inter_gene
GC content 0.52
exon number 4
gene id G219195
representative False

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 3595399 ~ 3596273 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCGGTGATGAAGGAATGCTGCCATCAAAGGCTTTGAAGCTTTGTGGTGAAGCAGGACCTACAAGACAAGGATGTGAAATGTCCTCAGACTGGTGTGAGCACTGAGGATGGCGAGCCACAGGTCCTGGAAATGGTGTAGAGCCATGGACGAGACGCTCCATCACTCCTCCTTCCAAGTGACTTGATCAAGGACACACTGGAGGTGATGCTGCAGAGATTGAACCAGCAACCTTCTGCTGACCAGCTCAGTGGTTTAGCCCACCACACCACAAAATCATGCTGATGGAGAGCACATGAATGTTTGCAGCAGACACAGCAGCAGCCAGATTGTCCCGCACATCTTCTCCCACTCTTGCTTCAAGGTTGTGGGGTTCAGGGGTCCATCATCATC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU248634 lncRNA upstream 2069 3593100 ~ 3593330 (+) True G219203
TU248620 lncRNA upstream 14864 3580214 ~ 3580535 (+) True G219194
TU248616 lncRNA upstream 18561 3575166 ~ 3576838 (+) True G219191
TU248567 lncRNA upstream 57720 3537187 ~ 3537679 (+) True G219154
TU248576 lncRNA upstream 59384 3535760 ~ 3536015 (+) True G219163
TU248641 lncRNA downstream 5499 3601657 ~ 3601914 (+) True G219210
TU248675 lncRNA downstream 51329 3647487 ~ 3647763 (+) True G219237
TU248598 lncRNA downstream 53601 3649759 ~ 3652595 (+) True G219176
TU248687 lncRNA downstream 112472 3708630 ~ 3709760 (+) True G219249
TU248749 lncRNA downstream 182474 3778632 ~ 3782075 (+) True G219303
CI01000051_03457204_03459579.mRNA mRNA upstream 135475 3456959 ~ 3459924 (+) True CI01000051_03457204_03459579
CI01000051_03443548_03451188.mRNA mRNA upstream 143585 3443548 ~ 3451814 (+) True CI01000051_03443548_03451188
CI01000051_03435613_03439371.mRNA mRNA upstream 155548 3435613 ~ 3439851 (+) True CI01000051_03435613_03439371
CI01000051_03431193_03432454.mRNA mRNA upstream 162611 3430291 ~ 3432788 (+) True CI01000051_03431193_03432454
CI01000051_03147600_03152676.mRNA mRNA upstream 442305 3147234 ~ 3153094 (+) True CI01000051_03147600_03152676
CI01000051_03679568_03682342.mRNA mRNA downstream 83279 3679437 ~ 3682528 (+) True CI01000051_03679568_03682342
CI01000051_03687377_03698806.mRNA mRNA downstream 91166 3687324 ~ 3698963 (+) True CI01000051_03687377_03698806
CI01000051_03800655_03819155.mRNA mRNA downstream 204497 3800655 ~ 3819197 (+) True CI01000051_03800655_03819155
CI01000051_04038453_04045552.mRNA mRNA downstream 442249 4038407 ~ 4046528 (+) True CI01000051_04038453_04045552
CI01000051_04071144_04075444.mRNA mRNA downstream 474986 4071144 ~ 4077125 (+) False CI01000051_04071144_04075444
TU248359 other upstream 348526 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 1529316 2060534 ~ 2066083 (+) False G218104
TU247403 other upstream 1529710 2060534 ~ 2065689 (+) False G218104
TU249085 other downstream 778252 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU249308 other downstream 1318816 4914974 ~ 5049810 (+) False G219803
TU249297 other downstream 1348800 4944958 ~ 5049810 (+) False G219803
TU249302 other downstream 1363271 4959429 ~ 5049810 (+) False G219803
TU249310 other downstream 1422147 5018305 ~ 5052033 (+) False G219803

Expression Profile