RNA id: TU249297



Basic Information


Item Value
RNA id TU249297
length 2278
RNA type TUCP
GC content 0.44
exon number 5
gene id G219803
representative False

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 4914974 ~ 5052033 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AAACAATGCACTACAATATTTTGAATTTGGACTGTAGTACCCATTTCAACCACTAGCCGTCAATATTACGTACTTCACCTTTAACCATTTGAGTTTTTGACTATATACATACAGTCCCGCTTGAAAGTTTGTGAACCCCTTTTTTTTTTTTTTTTTTTGTGATGGTTGTTCATAAGTCCCTTGTTTGTTCTGAGCAGTTAAATTGCCCAGCGTTCTTCAGAGGTCCTACAGATTCTTCAGTTTTCCAGCATTTTTTGCACATTTGAACCCTTTCCAGCAGCGACTGTATGATTTTGAGATCCATCTTTTCACACTGAGGACAATTGAGGGACTCAAACACAACTATTAAGAAAGGTCCAAACATTCACTGATGCTCCAGAAGGAAACACGATGCATTAAGAGCCGGCGGGTGAAAACTTTTGAACAGGATGAACAAGTCCAAATTTTTCTTATTTTGTTTAAATATCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTACAATCAAATCAACATTTATTGCAGTTTACAATGAGATCTACATAAAGATTAGCAGCCATATGCAGAGGGCCGGTGAGTTATATTTGGAGTAGGACCTCAGAGAGTAGGATTGGTGATCTTGCCCATGAAGAGGATGCTCTTGGTGCTGTCCTCTACAATCAGTACCATGAAAGGCCGGTTGAGCACCACGGTGTCTGGCAGGGACATGGGCATTATTTCTATCGTGGTTGCAGCCGCTGCCTCTGTGCCCTTCTCGTCCACACTGAGGACTGCCTGATGGACAACCTGGAGATTGGATTCAAAATGTGAACTTGACTCTCTAGAGTTTTCAAATTCATTAGGTCTATCAACCATTGGTTGTGCTTCAAGAGGTAAAAACAAGTCTATACATACGTCTGACACCTTGACTTTAACCTCTTCTATCATCCCGGAGAAATCTGCTGTGTCACTGAATGCATCGGCTATTCCCATCTCAAGCAGAATGCCTTTCAGTTTGGATGTTGCAGTGATGGAGAACTTGGGCATAAACAGGTCCACAGAACTGAAGGGCAGAAATGTAAAATATGGTATATCAGCTACTATGGCCATATCCCAAGTTCCCAAATTTCTGTGCAACTAAACAACCATCAACCTTCAGGTCCGAAGTCAACTAACACATGAATTTAAATCTGGAGGTATCGCCCATATTACCTTCTGAAGAGTTTATCATGCCAGGTCTTAACATGGTGTCTGCAGATGGATTCTTCAACCTCCTTCATCTTTCCATCTTCAGGAAGAACGATCATCATGGAAGTATTGCCTTTGTAGGGCACCATCATGACCGTAGTTTGGTTGATAGGGTCTTGATAGATGTCATAGCGGCCGGTTCTTTTCATCATGTCAACTTTCACGGTGGTGTCCTTGTCCACTTGGAAGTCAGCTTTTTGGGTCAGTGTTGCATCAAATGGCTTGTCCCACTTCCCCTCTGAAGTACATATAGTTAATCAGCATCATCACCGTATCTGAGTCTAGGTCCTTCACCATGTTGGTTATCTTGTCGTGGGTTTTCTTGGCGATGAACTTGTTAATCTCCTCTGCAGCAATTTCAGGCTTGGAGAAGTCAACGCTGAAGGCTTCGCTGTTGTAGTGGTGCTTAACTTCCTTCAGGAACGTGTCCACCACTTTTAAGCCTTCTCTGATGGCTACACCCGCTCCTGCTTCCAGTTGCATGGCATCCCGGCTGTGGCCCAGCATGTGGATCAAGTGCTCATAACCCTCATTGACCTGCTCAGTCTCAAACCCGCTATAACCCAGACTGCTGTATATCTGTGAATAAGTGCTGCCCTTGGCTCCTACAGCCAGCATGCTCAAAGCCATTGAGATCCCAACCGGGGAGAAGAAAATGTTCTTGCCCTCGGCATCAGGGTGGAACGCAAGTTTCTTGTAGAGAGAGAAGGCGAAGTCAGCGTTGTGTGGAGAGAGCAGGTGGCAGGCATCGGAGGCACCCTCGTGGCTGGGGTGGGGTTCGTCCTTCCCGTGGTGAAAATGGTGGTGGTGCTCGGCTGTGTGGCCTTCGTGGTCATGGCCTTTGTGGTCGTGGCCTTCGTGGTCGTGGCCTTCGTGGTCGTGGCCTTCGTGGGGCGCGGCCCAGGCTGTTGCTAGCAGCAGAGCAGCAATCGTACAGCAATAAATCTTTCCCCACATTTTTTTCACCTGTATTTTATCCTCCTGGGACCCAGAAAAAAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU249333 lncRNA upstream 12108 4932343 ~ 4932850 (+) True G219819
TU249281 lncRNA upstream 50779 4893236 ~ 4894179 (+) True G219798
TU249258 lncRNA upstream 118490 4826265 ~ 4826468 (+) True G219775
TU249143 lncRNA upstream 392486 4551837 ~ 4552472 (+) True G219662
TU249105 lncRNA upstream 488956 4455699 ~ 4456002 (+) True G219624
TU249373 lncRNA downstream 8862 5058672 ~ 5058912 (+) True G219859
TU249375 lncRNA downstream 10632 5060442 ~ 5060658 (+) True G219861
TU249380 lncRNA downstream 18648 5068458 ~ 5068720 (+) True G219866
TU249381 lncRNA downstream 19254 5069064 ~ 5069281 (+) True G219867
TU249382 lncRNA downstream 19874 5069684 ~ 5069908 (+) True G219868
CI01000051_04796878_04799272.mRNA mRNA upstream 145637 4796878 ~ 4799321 (+) True CI01000051_04796878_04799272
CI01000051_04763063_04778692.mRNA mRNA upstream 165876 4762496 ~ 4779082 (+) True CI01000051_04763063_04778692
CI01000051_04419475_04464134.mRNA mRNA upstream 480792 4419270 ~ 4464166 (+) True CI01000051_04419475_04464134
CI01000051_04374052_04393328.mRNA mRNA upstream 551281 4372658 ~ 4393677 (+) False CI01000051_04374052_04393328
CI01000051_04155754_04157992.mRNA mRNA upstream 786629 4155684 ~ 4158329 (+) True CI01000051_04155754_04157992
CI01000051_05072860_05074568.mRNA mRNA downstream 22819 5072629 ~ 5074874 (+) True CI01000051_05072860_05074568
CI01000051_05126681_05142536.mRNA mRNA downstream 75941 5125751 ~ 5142617 (+) False CI01000051_05126681_05142536
CI01000051_05174862_05175926.mRNA mRNA downstream 124298 5174108 ~ 5176507 (+) True CI01000051_05174862_05175926
CI01000051_05254556_05270993.mRNA mRNA downstream 204746 5254556 ~ 5271828 (+) True CI01000051_05254556_05270993
CI01000051_05296858_05301152.mRNA mRNA downstream 246874 5296684 ~ 5301334 (+) True CI01000051_05296858_05301152
TU249085 other upstream 569628 4374410 ~ 4375330 (+) True CI01000051_04374052_04393328
TU248359 other upstream 1698085 3245443 ~ 3246873 (+) True G218981
TU247407 other upstream 2878875 2060534 ~ 2066083 (+) False G218104
TU247406 other upstream 2879269 2060534 ~ 2065689 (+) False G218104
TU250885 other downstream 1775989 6825799 ~ 6833068 (+) True G221187
TU251039 other downstream 2292231 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 2359713 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 3055833 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 3293132 8342942 ~ 8343448 (+) True G222727

Expression Profile