RNA id: TU251036


Basic Information

Item Value
RNA id TU251036
length 308
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G221316
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7284987 ~ 7285294 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAACATTCACTGATGCTCCAAAAAAAAAAACATGATGCATTAATAGATGGGGGGTGAAAACATTTGGAATTTGAAGAGCAAGGTAAATTGTATTTAATTTGTCTTTCGGGAAACATGCAAGTATTTTCTGTTGCGTCCGAAGGGCAGTACTAAATGAAAGAAAATGATATTCAAGCAAAATAAGAAAAATTTGGACCTCTTCATCCTGTTCAAAAGTTTTCACCCCCCGACTCTTAATGCATCGTGTTTCCTTCTGAAGCATCAGTGAATGTTTGAACCTTTTTTAATAGTTGTGTTTGAGTCCCTCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251080 lncRNA upstream 36489 7248170 ~ 7248498 (+) True G221360
TU251073 lncRNA upstream 59820 7224890 ~ 7225167 (+) True G221353
TU251071 lncRNA upstream 62000 7222717 ~ 7222987 (+) True G221351
TU251008 lncRNA upstream 69408 7215363 ~ 7215579 (+) True CI01000051_07215332_07217167
TU250999 lncRNA upstream 77414 7207371 ~ 7207573 (+) True G221283
TU251085 lncRNA downstream 202 7285496 ~ 7285769 (+) True G221365
TU251067 lncRNA downstream 1093 7286387 ~ 7286655 (+) True G221347
TU251031 lncRNA downstream 6945 7292239 ~ 7293753 (+) True G221311
TU251098 lncRNA downstream 46363 7331657 ~ 7331868 (+) True G221378
TU251105 lncRNA downstream 88089 7373383 ~ 7373734 (+) True G221385
CI01000051_07267084_07283654.mRNA mRNA upstream 972 7267011 ~ 7284015 (+) True CI01000051_07267084_07283654
CI01000051_07259968_07261598.mRNA mRNA upstream 23256 7259718 ~ 7261731 (+) True CI01000051_07259968_07261598
CI01000051_07253002_07255432.mRNA mRNA upstream 29367 7252201 ~ 7255620 (+) True CI01000051_07253002_07255432
CI01000051_07215332_07217167.mRNA mRNA upstream 67279 7215332 ~ 7217708 (+) False CI01000051_07215332_07217167
CI01000051_07170752_07194524.mRNA mRNA upstream 90463 7170752 ~ 7194524 (+) True CI01000051_07170752_07194524
CI01000051_07287140_07287867.mRNA mRNA downstream 1846 7287140 ~ 7288035 (+) True CI01000051_07287140_07287867
CI01000051_07337005_07340657.mRNA mRNA downstream 51559 7336853 ~ 7340692 (+) True CI01000051_07337005_07340657
CI01000051_07345863_07353841.mRNA mRNA downstream 60569 7345863 ~ 7355120 (+) True CI01000051_07345863_07353841
CI01000051_07367270_07370738.mRNA mRNA downstream 81558 7366852 ~ 7370878 (+) True CI01000051_07367270_07370738
CI01000051_07378590_07389158.mRNA mRNA downstream 93296 7378590 ~ 7389570 (+) True CI01000051_07378590_07389158
TU250885 other upstream 451919 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2232954 5018305 ~ 5052033 (+) False G219803
TU249297 other upstream 2235177 4944958 ~ 5049810 (+) False G219803
TU251039 other downstream 56747 7342041 ~ 7342546 (+) True G221319
TU251108 other downstream 124229 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 820349 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 1057648 8342942 ~ 8343448 (+) True G222727

Expression Profile