RNA id: TU251105


Basic Information

Item Value
RNA id TU251105
length 352
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G221385
representative True

Chromosome Information

Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7373383 ~ 7373734 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AATAAATTACATTTTAAAATATATTAAAATATAAACCATTTTAAACTGTAATATTTCACAGTTTTACATGTTTTAACTGTATTTTTGATCAAATAAATGCAACTTTGTTGAGCTTAAGAGACCAACAACTTTTGAACGGTAGTGTAATTTCTTGCTTTTCTTACCAGGTTCTTAAACGAAGTGTGCTTTATCAGTGTGCTCACATTTCATGTTATCCAGATGGATTCTTAATGAACATGATTTTCCCAGCTCCTCCTCTCACGCATGCTGCCGGAGCGCTCATGTCCAGATGGCTTGCAAGGAGCATTTTGAAGCCAGTCACAGCCTGTGATGTAAACATACTTTTTGCCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU251098 lncRNA upstream 41515 7331657 ~ 7331868 (+) True G221378
TU251031 lncRNA upstream 79630 7292239 ~ 7293753 (+) True G221311
TU251067 lncRNA upstream 86728 7286387 ~ 7286655 (+) True G221347
TU251085 lncRNA upstream 87614 7285496 ~ 7285769 (+) True G221365
TU251036 lncRNA upstream 88089 7284987 ~ 7285294 (+) True G221316
TU251115 lncRNA downstream 2239 7375973 ~ 7376205 (+) True G221393
TU251106 lncRNA downstream 27441 7401175 ~ 7411152 (+) False G221386
TU251107 lncRNA downstream 35428 7409162 ~ 7413007 (+) False G221386
TU251056 lncRNA downstream 49189 7422923 ~ 7425419 (+) True G221336
TU251128 lncRNA downstream 76745 7450479 ~ 7450890 (+) False G221406
CI01000051_07367270_07370738.mRNA mRNA upstream 2505 7366852 ~ 7370878 (+) True CI01000051_07367270_07370738
CI01000051_07345863_07353841.mRNA mRNA upstream 18263 7345863 ~ 7355120 (+) True CI01000051_07345863_07353841
CI01000051_07337005_07340657.mRNA mRNA upstream 32691 7336853 ~ 7340692 (+) True CI01000051_07337005_07340657
CI01000051_07287140_07287867.mRNA mRNA upstream 85348 7287140 ~ 7288035 (+) True CI01000051_07287140_07287867
CI01000051_07267084_07283654.mRNA mRNA upstream 89368 7267011 ~ 7284015 (+) True CI01000051_07267084_07283654
CI01000051_07378590_07389158.mRNA mRNA downstream 4856 7378590 ~ 7389570 (+) True CI01000051_07378590_07389158
CI01000051_07391277_07399712.mRNA mRNA downstream 16900 7390634 ~ 7399786 (+) True CI01000051_07391277_07399712
CI01000051_07470914_07489207.mRNA mRNA downstream 97180 7470914 ~ 7489242 (+) True CI01000051_07470914_07489207
CI01000051_07507549_07530087.mRNA mRNA downstream 133815 7507549 ~ 7530087 (+) True CI01000051_07507549_07530087
CI01000051_07534938_07540104.mRNA mRNA downstream 158905 7532639 ~ 7540418 (+) True CI01000051_07534938_07540104
TU251039 other upstream 30837 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 540315 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2321350 5018305 ~ 5052033 (+) False G219803
TU249297 other upstream 2323573 4944958 ~ 5049810 (+) False G219803
TU251108 other downstream 35789 7409523 ~ 7413007 (+) True G221386
TU251044 other downstream 731909 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 969208 8342942 ~ 8343448 (+) True G222727

Expression Profile