RNA id: TU251056



Basic Information


Item Value
RNA id TU251056
length 631
lncRNA type antisense_over
GC content 0.47
exon number 5
gene id G221336
representative True

Chromosome Information


Item Value
chromosome id CI01000051
NCBI id null
chromosome length 8436717
location 7422923 ~ 7425419 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTGCTTGTCGATAAACTCCCTGGTGTCTTTCTCAATGTGGCCCTCATAGAGATTGGTTGTCATGTTCATAAGGCCGATTTTGGAGAGCCCAAAGTCAGTGAGTTTAATATGCCCCATTGAAGTAATCAAGAGGTTGTCTGGTTTGAGATCTCTGTGCACAATGCCGTAACTGTGGAGGTACTCCAGTGCCAAAACGGTCTCCGCAAAGTACATCCTGGTCATATCTACAGGAAGTGGGCCCATGTTCTTTAGCAGAGTGGCACAATCACCACCTTCCACATACTCCATGACCATGCACAGATGTCTGCGGGTCTCGAAGGAGCAGAACATGCTGACCACAAAGGGATTCTCTGCAAATGTCAGGATGTCTCGCTCCACAAACACCTGCTGGATCTGGTTTCGCAGAATCAGGTTTTGTCGGTTGATCTTTTTCATTGCAAATCGTTGGCGAGTTTCTTTATGCCTTACCAGATACACAGCCCCATAAGCCCCATTACTGATGAGTTTTAAGGTCTCAAAATCGCTCTCCAGTGGTTTTCTTCGTAGTGGTGTGGGTGAAGATTTATTCTGCTCTGCAGTTTCTTCAGAATCAACTGTCAGTGTGGGGCCAGAGTCGTACTGCTCCTCTAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU251107 lncRNA upstream 9916 7409162 ~ 7413007 (+) False G221386
TU251106 lncRNA upstream 11771 7401175 ~ 7411152 (+) False G221386
TU251115 lncRNA upstream 46718 7375973 ~ 7376205 (+) True G221393
TU251105 lncRNA upstream 49189 7373383 ~ 7373734 (+) True G221385
TU251098 lncRNA upstream 91055 7331657 ~ 7331868 (+) True G221378
TU251128 lncRNA downstream 25060 7450479 ~ 7450890 (+) False G221406
TU251129 lncRNA downstream 25060 7450479 ~ 7450755 (+) False G221406
TU251131 lncRNA downstream 25060 7450479 ~ 7450712 (+) True G221406
TU251135 lncRNA downstream 26321 7451740 ~ 7452011 (+) True G221408
TU251136 lncRNA downstream 29912 7455331 ~ 7455537 (+) True G221409
CI01000051_07391277_07399712.mRNA mRNA upstream 23137 7390634 ~ 7399786 (+) True CI01000051_07391277_07399712
CI01000051_07378590_07389158.mRNA mRNA upstream 33353 7378590 ~ 7389570 (+) True CI01000051_07378590_07389158
CI01000051_07367270_07370738.mRNA mRNA upstream 52045 7366852 ~ 7370878 (+) True CI01000051_07367270_07370738
CI01000051_07345863_07353841.mRNA mRNA upstream 67803 7345863 ~ 7355120 (+) True CI01000051_07345863_07353841
CI01000051_07337005_07340657.mRNA mRNA upstream 82231 7336853 ~ 7340692 (+) True CI01000051_07337005_07340657
CI01000051_07470914_07489207.mRNA mRNA downstream 45495 7470914 ~ 7489242 (+) True CI01000051_07470914_07489207
CI01000051_07507549_07530087.mRNA mRNA downstream 82130 7507549 ~ 7530087 (+) True CI01000051_07507549_07530087
CI01000051_07534938_07540104.mRNA mRNA downstream 107220 7532639 ~ 7540418 (+) True CI01000051_07534938_07540104
CI01000051_07542167_07549737.mRNA mRNA downstream 116748 7542167 ~ 7550660 (+) True CI01000051_07542167_07549737
CI01000051_07611022_07612093.mRNA mRNA downstream 185030 7610449 ~ 7612093 (+) True CI01000051_07611022_07612093
TU251108 other upstream 9916 7409523 ~ 7413007 (+) True G221386
TU251039 other upstream 80377 7342041 ~ 7342546 (+) True G221319
TU250885 other upstream 589855 6825799 ~ 6833068 (+) True G221187
TU249310 other upstream 2370890 5018305 ~ 5052033 (+) False G219803
TU249302 other upstream 2373113 4959429 ~ 5049810 (+) False G219803
TU251044 other downstream 680224 8105643 ~ 8128075 (+) True G221324
TU252626 other downstream 917523 8342942 ~ 8343448 (+) True G222727

Expression Profile