RNA id: TCONS_00016629


Basic Information

Item Value
RNA id TCONS_00016629
length 675
RNA type mRNA
GC content 0.48
exon number 5
gene id XLOC_008254
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3219134 ~ 3223448 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCTACTGCAGACAGTTGAATATAAACTGTTTAATATCTTTTTTCATCTGACTACATGCACTGGTTGGTTGTTTTTAGACTTGAAGATGGCACATGAGCAGCAAAAGAAGTCAATGGACGAGGAGTTTGAGAAGCTCAGACTCTCACTGCAGGATCAGGTGGACACGCTGACATTTCAGAACCGAACTCTGCGAGACCGGGCCAAACGCTTTGAAGAAGCACTGCGCAGAAGCACAGATGAGCAGATAgatgcTCTTGCTCCATATCAGCACATAGAGGAGGATCTGAAGAGTCTTAAAGAGGTTCTGGAGATGAAGAACCAGCAGATTCATCAACAGGAGCTCAAAATTTCAGAGCTGGAAAAAATGGCTCAAAAGAATGTTCTATTGGAGGAGCGTATTCAGGTCTTACAACAACAGAACGAAGACCTGAAGGACAGGATTGACCGCAACCTTGCCATGTCCAGGCAACTGTCAGAAGAAAATGCCAACCTGCATGTGCACGTTGAGAAAGAGAGCAATGAGAAGAAGCGTCTGAGTCGCACCAATGAAGAGCTTATGTGGCGTCTCCAAACGGGCGAGTTAAGCCCTCGAATGTCTCCCACCCAATCACCCCTCCATCGACCAGCCTCTAGTCCTGCTTCACCCTCCCGACCGCAGTCCTTCCCTAGATGA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000113532

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016627 lncRNA upstream 17837 3169974 ~ 3201297 (+) False XLOC_008253
TCONS_00016628 lncRNA upstream 17921 3196151 ~ 3201213 (+) True XLOC_008253
TCONS_00018870 lncRNA upstream 229183 2988791 ~ 2989951 (+) True XLOC_008251
TCONS_00018869 lncRNA upstream 331636 2886700 ~ 2887498 (+) True XLOC_008249
TCONS_00018751 lncRNA upstream 353205 2865624 ~ 2865929 (+) True XLOC_008250
TCONS_00018871 lncRNA downstream 14147 3237595 ~ 3239957 (+) True XLOC_008255
TCONS_00018872 lncRNA downstream 159366 3382814 ~ 3383114 (+) True XLOC_008258
TCONS_00018873 lncRNA downstream 303957 3527405 ~ 3529781 (+) True XLOC_008260
TCONS_00018874 lncRNA downstream 369891 3593339 ~ 3595259 (+) True XLOC_008262
TCONS_00018752 lncRNA downstream 458864 3682312 ~ 3682906 (+) False XLOC_008264
TCONS_00016626 mRNA upstream 56548 3125136 ~ 3162586 (+) True XLOC_008252
TCONS_00016624 mRNA upstream 329033 2856696 ~ 2890101 (+) False XLOC_008249
TCONS_00016625 mRNA upstream 331821 2857556 ~ 2887313 (+) False XLOC_008249
TCONS_00016621 mRNA upstream 640995 2559875 ~ 2578139 (+) True XLOC_008244
TCONS_00016619 mRNA upstream 675300 2520319 ~ 2543834 (+) False XLOC_008243
TCONS_00016630 mRNA downstream 23027 3246475 ~ 3251221 (+) True XLOC_008256
TCONS_00016631 mRNA downstream 60968 3284416 ~ 3368645 (+) False XLOC_008257
TCONS_00016632 mRNA downstream 60968 3284416 ~ 3379041 (+) False XLOC_008257
TCONS_00016633 mRNA downstream 61236 3284684 ~ 3372979 (+) True XLOC_008257
TCONS_00016635 mRNA downstream 315596 3539044 ~ 3652151 (+) True XLOC_008261
TCONS_00016623 other upstream 533428 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 544544 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 860509 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 1345356 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016599 other upstream 1650792 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016634 other downstream 282861 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016665 other downstream 2631663 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 3335602 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 3455073 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 3547138 6770586 ~ 6772120 (+) True XLOC_008302

Expression Profile

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