RNA id: TCONS_00018871


Basic Information

Item Value
RNA id TCONS_00018871
length 2209
lncRNA type inter_gene
GC content 0.38
exon number 2
gene id XLOC_008255
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3237595 ~ 3239957 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctttgatcctcgattggtctcatgcagtcaagagatgtgatttcgcaggtcagagttcacaaagcttgaactgcatcgcagcaacctgcgaaacttgacgcatgaccttgcATTTCCGCTCTGACGCATAcatgtgcatatgaatggaagtctatggggagaaaagcacagtgtgaccgcagctttaggcaTTCACTGgtctattttcttatttttcagaGTGATTAAATATTTAGCGATGTGTCGGACCAACACAGCATTGGAGTTAACAGCAACACATTCTCCTCAAAGCATTCAATTATTGTGCACTGAAAGACTGGCCAGATAGACAAACCAGGTAAAGATAAATGACAGAGATGGGAACAAATATGCAAAACTAGATTATGAAAACTAGTaaacgtttttaaaaataaataaagatgttgAAATCTTAATAGTTATTCCAATTATTCCCTTATTACAATATTTCCCtctaattacattacaacattacataacatttatttGCTTGTTAAAGCACCAGATGTTTTGTAAGAGCATTTATTTGCAAAGCAGATACATAAAATACACAGGCTGGAAATCTATATATGCAAATTAATGTGTGCTACATTAAATGACACATTTGGAGCACATGTAACGGAGTTGAAAAGATAAGATGATATAATTCATCAGAGTGAATGACATGAAATTAGGCATTATACATAAGATGGTGTTTGAGTGCCCCCTTGTGGTAAATAAATTGCAGGAGAATATTGTCCCTTTGCGCTTACCGTAGGTTCACAGAGATCGGTGAGACTGAAAGGTAAGCACagctcatctctctctctcgcaaACTAATTAAAAAGGGATGatataaacaattttatataatttcatcGAGCGAAACAGATGTGTATGTTGTTTAAATAATACACTAGTTCATGTTTTGATTtcctaatgtttattttttttacgatttAAATGATTTGTGTGTTGCTAGCTGAAGCATTACATTGCTAATGCATTTTAAAGTTGTATACAAGATCCCAACGAGAGAGTTTTTGTATTTTTCCCTTTTAGAGAGAGAGCTGAATGTTAATGCTGCACTTTCCTGCATTACATATCTTTGTTTTATCTCAGACGGAGAGAATAAATCTGATTGAGTGCAATGGTGGATGGCTTCCTTTATTGTGTCCAAGACCTGAGTTATTATGGACGGGTGTGTTGCTGATGGGACACCCGTTACACACACAATGTCAAAAACAACACGCatcactacagaaaaaaaaaaacgtttttgtaGTAATACCTTTAAAAAGCTGATTAATTTCTAACATTGAAATCTCTTTGAAAAGTAtttactaagggtgtcacgatcctccaaatcctcgattcaattacattttcgattctaaaggcacaattcgattcgattttcgattatgaataattaattaattaatgaccaattaattatttgtagcctaccgtttaaactacctgacctgcatggtctttgttttacccataaacaaatcatacagtaaatgaataaaggcaagatacacacataattaccacctgtcaatcacttttttctgcaggactcataaataggcagtgatctgtgtcgttatgtgaagtttttaaactaatttcgagaggagcacgtgatataattgacagcagctggccacctatctacactcattagttagccaatcagatctatcctaacccactataagtagcctagctagacattactcccttatcttcgttttccgaagaaacaaacgacaggtccgctctagctcctccaaaagttactcacggacaaaacggatcctccacatctcctactattcttcaactacaataccacaccaccTTTAACACCATCGTCAGCAactacaaaaaatgacaaaaacaacaacaacagcgacggcggctgagatcacaacagcatcagcgcagctacatacaagaaagaaagctccgggctccctgaaacaccagccccgtcttaacaacaaccagcccagaatgaaagtcagctcgagaccgaggctccaacgagaggccgtaggcctatccactccagccagatcacaatgcaatccccagctccgctacgtaccttctccagcatcatcatgtgtcactcatatccaacaacgactgtcactgaactcctccaaactcctagACGCCGGGACCATAATTCAAA

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:1902850 microtubule cytoskeleton organization involved in mitosis biological_process
GO:0000910 cytokinesis biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0006996 organelle organization biological_process
GO:0048285 organelle fission biological_process
GO:0007049 cell cycle biological_process
GO:0007051 spindle organization biological_process
GO:0007052 mitotic spindle organization biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0051301 cell division biological_process
GO:1903047 mitotic cell cycle process biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0000280 nuclear division biological_process
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016627 lncRNA upstream 36298 3169974 ~ 3201297 (+) False XLOC_008253
TCONS_00016628 lncRNA upstream 36382 3196151 ~ 3201213 (+) True XLOC_008253
TCONS_00018870 lncRNA upstream 247644 2988791 ~ 2989951 (+) True XLOC_008251
TCONS_00018869 lncRNA upstream 350097 2886700 ~ 2887498 (+) True XLOC_008249
TCONS_00018751 lncRNA upstream 371666 2865624 ~ 2865929 (+) True XLOC_008250
TCONS_00018872 lncRNA downstream 142857 3382814 ~ 3383114 (+) True XLOC_008258
TCONS_00018873 lncRNA downstream 287448 3527405 ~ 3529781 (+) True XLOC_008260
TCONS_00018874 lncRNA downstream 353382 3593339 ~ 3595259 (+) True XLOC_008262
TCONS_00018752 lncRNA downstream 442355 3682312 ~ 3682906 (+) False XLOC_008264
TCONS_00018875 lncRNA downstream 442444 3682401 ~ 3695130 (+) False XLOC_008264
TCONS_00016629 mRNA upstream 14147 3219134 ~ 3223448 (+) True XLOC_008254
TCONS_00016626 mRNA upstream 75009 3125136 ~ 3162586 (+) True XLOC_008252
TCONS_00016624 mRNA upstream 347494 2856696 ~ 2890101 (+) False XLOC_008249
TCONS_00016625 mRNA upstream 350282 2857556 ~ 2887313 (+) False XLOC_008249
TCONS_00016621 mRNA upstream 659456 2559875 ~ 2578139 (+) True XLOC_008244
TCONS_00016630 mRNA downstream 6518 3246475 ~ 3251221 (+) True XLOC_008256
TCONS_00016631 mRNA downstream 44459 3284416 ~ 3368645 (+) False XLOC_008257
TCONS_00016632 mRNA downstream 44459 3284416 ~ 3379041 (+) False XLOC_008257
TCONS_00016633 mRNA downstream 44727 3284684 ~ 3372979 (+) True XLOC_008257
TCONS_00016635 mRNA downstream 299087 3539044 ~ 3652151 (+) True XLOC_008261
TCONS_00016623 other upstream 551889 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 563005 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 878970 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 1363817 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016599 other upstream 1669253 1560665 ~ 1568342 (+) True XLOC_008228
TCONS_00016634 other downstream 266352 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016665 other downstream 2615154 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 3319093 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 3438564 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 3530629 6770586 ~ 6772120 (+) True XLOC_008302

Expression Profile

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