RNA id: TCONS_00018875


Basic Information

Item Value
RNA id TCONS_00018875
length 3057
lncRNA type read_through
GC content 0.46
exon number 3
gene id XLOC_008264
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 3682312 ~ 3718383 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGGTGATGTAGATAGAGTTGACGGATCTGAAAAGATGATCCCAGACTACAGCAGACTGGATCCGCGTTCAGATGATGAAGACACGGATTTTGAAGAGGATTGTCCGCATGACTGGATCAACCACCTAGAGAAAGCGCTTGATGAGCATGACTAATATAATGTTGAATATTTCCAGCTAAGGGCTCTCATGAAAGGAATGCTGCCACACTCCTGCCAAGGCTTCAGTCAGTTTGCTGCCAGCTTGATTTACAAGTGGTCTCTGGCTGACTGTTGAGCCGCAGATAAATGCCCCCGCTTGTGTTATTGAGGAAATGCTGGGCCAGCGTTCAAGCCTTATCTGGAAGCCACACAGAGTGCCGCAGGGACCAAGTCTAATTTTTTCAATTCGCCTCAATCGAAGCAAGAGACTGGTGAGAGACTCAGATAAATGTTTAAGGAAGAACTGTTATAAGATAATGACCCAtacactcattctgaaaacctccTGTTCCTGTGGGGTTTGGCTACTCATGGGACACATGAGGcaatctttttttctctctctctttcacatgAGCTTAAAATACATGCAGCATTGCTCTTCATTTATGATGTCAAATGATGGCCAATGCCGTCTATTACATTTCATTTAGACGTCATTGACTGAGTTATAGTGAAAACAGACAATTTCTAGCTGCAGTGACTCAATTTGATTAGATTATGTTGGATTATATTAGATTATCATGGTAGGAAATGCACTTCAAACAGTTTTgttctcatttaaaataatgaagaGCATCAAAAGGTCACCGGTCTATCAAATAGCACAAACACTAAGGGATTGTTCATCCAGAAATTAAAGTTCTGCCATCATTTAGTTACTTTTGACTTGTGGAAGACTGGATATTTAGTGGCTACAAGTGTCCAACATTCATCTATAACTGAggctccgtttacactagtgcgttttaggcCATGTCTACACTAATCTGGATGAATTTGATTTGAGTTTTCCTCTAAAAACGCTTCACATCCACACTGTCGTCTCTAttcgttttccaaaactttgtcatccacactgaaacgactACAAATGCTTTCATTTACTGCGCATGTGTGAAACGTAAGACACTTCGGCACGCGTCATTTCCGCCTGACgtttattttctttccggctctTTGAAACGTTGCGGCAAAATGTCAAGGAAAAGCCCAGAGTTTTTTAAATGGACTGACAATGAAGTAGAGTTGCTGCTTCGAGTAACACATGCATACAAAGTTGCAAAAGAGAGTGAAAATGTACACTTGGAGATATACTGGACCGCTTTAGATGAACAGTATCCTGCTGATGAAGCTGCTTACCCTCACAGCAGTAAAGACATCactaaaatcataatcacaacgaAATTAAAGTAATCAAATTGGTAACATGACTgtgtcacatgacaaaaaaaaaacatgtcgtTTTCGAAAGACTCCGTTTTCACAGTCTACACTACAGCATTTTCAAATTTATTCACTTTGAAAGAGCgttttcaaaaatatatgtttttgtttcctaaaaacgcgtctcagtgtggacggaagggcaaaacggagacaaaaatatgcattttcaaGTGAAAAAgcattagtgtggacatggccttagttttaaaacggcattttagaatgaaaatgatccgcgtccacactagtgtttcagccagcgtttctgaactgctcagaaatgctggaaaatttccggaacaaatttaccggttgtggcgagggggcgtggccgagagccgtgggaacggggtgaggccaccgcgtgagtggatacacgtgcggtgcgcacctgcctcggatcccacggaaggagctagACTGGCTGTGTGGACAGCTCTGTGTGCCAGACAGCTACCTGAGACAAAAGAAGATTTACATCAAAGAAAGGCACAGAATTTTGCAAAACAGGGAACGTATGTGACTTCAACTTCAGGGGATGACACCATGCTTTAAAAGAGATAAAAGATGAGGGAGCTTGACAGCCTCTTGAAGTAGTTTTGGACTGAGAAGACTGATCCTGATGGCAGAATGAATGAGACAGCAGGCGTTTTTTAACTTCATCATGGACTATCTGCTCTATATTGACCCAAGTAACCTGGAGAGTGACGCATCCCTATTGAAGGCGGAAGGAGTTAGACTGGCTGTGTGGACAGCTCTGTGTGCCAGACAGCTACCTGAGACAAAAGAAGATTTACATCAAAGAAAGGCACAGAATTTTGCAAAACAGGGAACGTATGTGACTTCAACTTCAGGGGATGACTTCAACTTCAGGGAGTTACAaagagagaggaccgggcccgggcatgttattttacttttgctttcagtttgacggcagtctccgcgaggagctgccgtccgtttgttttgatttaaatggcagtctccgtgaggagctgccctcattattattaataaatcattttaaactccgtcggttctccgcctccttcttcccggcggccaaagggccgtaaacttcattaaaagtggtgccgaagcccgggagaagaagggacgcgttgtccagatgccctcgccgctgagagagggggcgagtgttcgggagttaacccgagtgggggagaaacccgttcgtctgcccagagtgccggggcggcctgaggctggcgaggaaaggatctgcctgctgccgtctcccagcatggggaggagcaggggacgcggggctcaccaccggaagggaaagagctgaagggagccatcccacagaacccgggggagtcgccgcgatccgccatgatgccagagcctgcatccatccaccgaagcgggagcggagcaggagaccagaaatgccgccagccagccaggagaaccgccgccggacgccagaagacggacgggtggatagattcctccacagggctcccagcacgtcgtcgcatctctcagctggtggaggaacgagtggcagcgtgtctggagaaccgaaccccaatttttttttttttttcctctctcccctttctcggtctactctgtcgttcctcctttttttttccc

Function

GO:

id name namespace
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0031090 organelle membrane cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018874 lncRNA upstream 87142 3593339 ~ 3595259 (+) True XLOC_008262
TCONS_00018873 lncRNA upstream 152620 3527405 ~ 3529781 (+) True XLOC_008260
TCONS_00018872 lncRNA upstream 299287 3382814 ~ 3383114 (+) True XLOC_008258
TCONS_00018871 lncRNA upstream 442444 3237595 ~ 3239957 (+) True XLOC_008255
TCONS_00016628 lncRNA upstream 481188 3196151 ~ 3201213 (+) True XLOC_008253
TCONS_00018753 lncRNA downstream 254750 3949880 ~ 3954528 (+) False XLOC_008268
TCONS_00018877 lncRNA downstream 254750 3949880 ~ 3954691 (+) True XLOC_008268
TCONS_00018878 lncRNA downstream 617961 4313091 ~ 4320629 (+) False XLOC_008269
TCONS_00018879 lncRNA downstream 617961 4313091 ~ 4321015 (+) False XLOC_008269
TCONS_00018880 lncRNA downstream 618114 4313244 ~ 4319929 (+) False XLOC_008269
TCONS_00016635 mRNA upstream 30250 3539044 ~ 3652151 (+) True XLOC_008261
TCONS_00016632 mRNA upstream 303360 3284416 ~ 3379041 (+) False XLOC_008257
TCONS_00016633 mRNA upstream 309422 3284684 ~ 3372979 (+) True XLOC_008257
TCONS_00016631 mRNA upstream 313756 3284416 ~ 3368645 (+) False XLOC_008257
TCONS_00016630 mRNA upstream 431180 3246475 ~ 3251221 (+) True XLOC_008256
TCONS_00016637 mRNA downstream 70971 3766101 ~ 3772525 (+) False XLOC_008265
TCONS_00016639 mRNA downstream 70971 3766101 ~ 3783359 (+) False XLOC_008265
TCONS_00016638 mRNA downstream 70971 3766101 ~ 3783359 (+) False XLOC_008265
TCONS_00016640 mRNA downstream 70971 3766101 ~ 3796818 (+) False XLOC_008265
TCONS_00016641 mRNA downstream 70971 3766101 ~ 3804420 (+) False XLOC_008265
TCONS_00016634 other upstream 175978 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 996695 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 1007811 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 1323776 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 1808623 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 2159981 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 2863920 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 2983391 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 3075456 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 4987692 8682822 ~ 8682937 (+) True XLOC_008317

Expression Profile

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