RNA id: TCONS_00018879


Basic Information

Item Value
RNA id TCONS_00018879
length 632
lncRNA type antisense_over
GC content 0.46
exon number 3
gene id XLOC_008269
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4313091 ~ 4321015 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggataaaaatgttcattttctaaATGAGGAGCGCTCATTTATGTTGTTCACTGTATACCTGTTACAGTACAAACTATCCTCGCGCGACCCCCCGGCGCTCCAGTTGCCATGGGTAACGTACGCCAGTCTATAAAGCGTTGTGCAACTCAAGACGCTCTCTCGTAGCCACTCCCTGTAAACAAACCAGCAAGCCTCGAACAAAGAGAAACGAATAATAAAAAACCAGTTCGTCACGGGTTGTAAATTTAACAGAAAGGAATCTGCGCTATTCCAGAAAAACCAACGAGTTCGGTTTGTCGTGTTCGTGTCAACTGCTTGATGGTTTCTGGGAACCCACGCGCGGAATGAAGGCAACATATTTCTGCATCTTGGATAACACCCAAACCCTGCATCGTTTAAATGAGAAGAGAACTGCAGTAAATTGCTGGCCCGATATCAGAAGgaaatggacgtttttaccAGGACAACACTGCTACAgacgagggtgtgctacagaggactgcatcattttatcgctcaccgggttacatagactGAAGCAGGCAAGCGTCATCatggtgtttacctggtgccatgagctaaagcctaggaggacacttaagcatGTCACTCCtaaagagattgtgattttg

Function

GO:

id name namespace
GO:0008281 sulfonylurea receptor activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018877 lncRNA upstream 358400 3949880 ~ 3954691 (+) True XLOC_008268
TCONS_00018753 lncRNA upstream 358563 3949880 ~ 3954528 (+) False XLOC_008268
TCONS_00018876 lncRNA upstream 594708 3682401 ~ 3718383 (+) True XLOC_008264
TCONS_00018875 lncRNA upstream 617961 3682401 ~ 3695130 (+) False XLOC_008264
TCONS_00018752 lncRNA upstream 630185 3682312 ~ 3682906 (+) False XLOC_008264
TCONS_00018754 lncRNA downstream 207534 4528549 ~ 4531965 (+) True XLOC_008270
TCONS_00018882 lncRNA downstream 232881 4553896 ~ 4554428 (+) True XLOC_008271
TCONS_00018755 lncRNA downstream 935486 5256501 ~ 5256782 (+) True XLOC_008278
TCONS_00018883 lncRNA downstream 956888 5277903 ~ 5278903 (+) True XLOC_008279
TCONS_00018884 lncRNA downstream 1147083 5468098 ~ 5470851 (+) False XLOC_008289
TCONS_00016644 mRNA upstream 387102 3825117 ~ 3925989 (+) True XLOC_008267
TCONS_00016643 mRNA upstream 496334 3808996 ~ 3816757 (+) True XLOC_008266
TCONS_00016641 mRNA upstream 508671 3766101 ~ 3804420 (+) False XLOC_008265
TCONS_00016640 mRNA upstream 516273 3766101 ~ 3796818 (+) False XLOC_008265
TCONS_00016645 mRNA downstream 311767 4632782 ~ 4635819 (+) True XLOC_008272
TCONS_00016646 mRNA downstream 648113 4969128 ~ 4985077 (+) True XLOC_008273
TCONS_00016647 mRNA downstream 667174 4988189 ~ 4999810 (+) False XLOC_008274
TCONS_00016648 mRNA downstream 667187 4988202 ~ 4999804 (+) True XLOC_008274
TCONS_00016649 mRNA downstream 707593 5028608 ~ 5074983 (+) True XLOC_008275
TCONS_00016634 other upstream 806668 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 1627385 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 1638501 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 1954466 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 2439313 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 1534096 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 2238035 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 2357506 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 2449571 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 4361807 8682822 ~ 8682937 (+) True XLOC_008317

Expression Profile

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