RNA id: TCONS_00016647


Basic Information

Item Value
RNA id TCONS_00016647
length 1201
RNA type mRNA
GC content 0.40
exon number 5
gene id XLOC_008274
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 4988189 ~ 4999810 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCACCCAGGTCACAGCAAATGAACAGGAAGAAAAGATGGCGGCGAGGAACGGAAAGAATAGTATACTGGAAAAATGGAGGATTGATGAAAAGCCTGTGAAGATTGACAAATGGGATGGTGCAGCTGTGAAGAACTCTCTAGATGATGCAGCTAAGAAGGTTCTGATTGAAAAATATGGCTACCTTGAGAGTTTCAACTTGGTGGATGGACGTCTGTTCATTTGCACAGTCTCCTGCCTTTTCGCCATTGTAGCTTTAATTTGGGATTACCTCCACCCGTTTCCTGAGTCCAAGCCTGTGCTGGCGTGCTGTGTGGTTTCATACTTCATTATGATGGGGATTTTGACCCTGTACACTTCCTACAAAGAGAAGAACATCTTCCTCGTGGCCATGCAGAAGGACCCAGCAGGAATGGACCCAGATCACAATTGGTGTCTGTCCTCCAGCCTAAAAAGGTTTGATGACCAGTACACATTAAGAATGTCCTTCACTGACGGGAAAACCAAGCAGTCGAGGGAAACCGAGTTTACAAAGTCAGTAAGCGTTTTCTTCGACGAGAACGGGACGCTGGTGATGGACCAATACGAAAAATACGTCTCCAAGCTTCACGACACTCTGGCCACAGAGAAGAAGACGAAGTAAACGGTTAGTGGAAATGACGGCACCAGCTTTCAGCGACCCAGCACACACAATTTAATGGTGGCTTTAGTGGACAAAACACTGATGTTTTTCAGGCTAGTTTGAGTTCAGCTCTCAACTGTAATAATATAGAAGTGTTTCGTTTAATTGCTTAtgtttcaaacaaacaaacaaaaaggtccAAATGTCTGTTTTGTTAtccatattttttaaatgtaagatcAGTTGATAAGGCAGACGTTTCTATGATATTCATCATTTAGTGTGTGCAGTATATTTTaggtacatttaaataaatgaaatggtaTGTAATCAGATACAAATGCCAGAGTTTTATGGTGGAAATGTATATTTTCATCAAACAAAAGTCACTTCTTTCTTGGAGGCGATCAATGTTAGTGTTTCCACATTTCACAATGCCTATTGAATAATGTGTCTGATTTACATCTGATTATCAGTATATGTACACATTTTGTCCCGAGAGCCTTAAGTcagtttttcaattttttttcttcctgttttgAATTTTATCTGTTATTTAGGCTTTAAaagacagcaaaaaa

Function

GO:

id name namespace
GO:0006465 signal peptide processing biological_process
GO:0006508 proteolysis biological_process
GO:0045047 protein targeting to ER biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0005787 signal peptidase complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function

KEGG:

id description
ko03060 Protein export

ZFIN:

id description
ZDB-GENE-050320-32 Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS2 (signal peptidase complex subunit 2).

Ensembl:

ensembl_id ENSDART00000142995

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018882 lncRNA upstream 433761 4553896 ~ 4554428 (+) True XLOC_008271
TCONS_00018754 lncRNA upstream 456224 4528549 ~ 4531965 (+) True XLOC_008270
TCONS_00018879 lncRNA upstream 667174 4313091 ~ 4321015 (+) False XLOC_008269
TCONS_00018755 lncRNA downstream 256691 5256501 ~ 5256782 (+) True XLOC_008278
TCONS_00018883 lncRNA downstream 278093 5277903 ~ 5278903 (+) True XLOC_008279
TCONS_00018884 lncRNA downstream 468288 5468098 ~ 5470851 (+) False XLOC_008289
TCONS_00018885 lncRNA downstream 468550 5468360 ~ 5471508 (+) True XLOC_008289
TCONS_00018886 lncRNA downstream 841747 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00016646 mRNA upstream 3112 4969128 ~ 4985077 (+) True XLOC_008273
TCONS_00016645 mRNA upstream 352370 4632782 ~ 4635819 (+) True XLOC_008272
TCONS_00016644 mRNA upstream 1062200 3825117 ~ 3925989 (+) True XLOC_008267
TCONS_00016643 mRNA upstream 1171432 3808996 ~ 3816757 (+) True XLOC_008266
TCONS_00016641 mRNA upstream 1183769 3766101 ~ 3804420 (+) False XLOC_008265
TCONS_00016649 mRNA downstream 28798 5028608 ~ 5074983 (+) True XLOC_008275
TCONS_00016650 mRNA downstream 86528 5086338 ~ 5106171 (+) False XLOC_008276
TCONS_00016651 mRNA downstream 88400 5088210 ~ 5106055 (+) True XLOC_008276
TCONS_00016652 mRNA downstream 116369 5116179 ~ 5148793 (+) False XLOC_008277
TCONS_00016653 mRNA downstream 132629 5132439 ~ 5148793 (+) True XLOC_008277
TCONS_00016634 other upstream 1481766 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 2302483 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 2313599 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 2629564 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 3114411 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 855301 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 1559240 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 1678711 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 1770776 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 3683012 8682822 ~ 8682937 (+) True XLOC_008317

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU346237 True 383 lncRNA 0.46 4 CI01000092 1884622 ~ 1890038 (-)