Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016648 |
| length | 1182 |
| RNA type | mRNA |
| GC content | 0.40 |
| exon number | 5 |
| gene id | XLOC_008274 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 4988189 ~ 4999810 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006465 | signal peptide processing | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0045047 | protein targeting to ER | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005787 | signal peptidase complex | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0043231 | intracellular membrane-bounded organelle | cellular_component |
| GO:0016787 | hydrolase activity | molecular_function |
| GO:0008233 | peptidase activity | molecular_function |
| id | description |
|---|---|
| ko03060 | Protein export |
| id | description |
|---|---|
| ZDB-GENE-050320-32 | Predicted to enable peptidase activity. Predicted to be involved in protein targeting to ER and signal peptide processing. Predicted to act upstream of or within proteolysis. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Predicted to be part of signal peptidase complex. Orthologous to human SPCS2 (signal peptidase complex subunit 2). |
| ensembl_id | ENSDART00000062852 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018882 | lncRNA | upstream | 433774 | 4553896 ~ 4554428 (+) | True | XLOC_008271 |
| TCONS_00018754 | lncRNA | upstream | 456237 | 4528549 ~ 4531965 (+) | True | XLOC_008270 |
| TCONS_00018879 | lncRNA | upstream | 667187 | 4313091 ~ 4321015 (+) | False | XLOC_008269 |
| TCONS_00018755 | lncRNA | downstream | 256697 | 5256501 ~ 5256782 (+) | True | XLOC_008278 |
| TCONS_00018883 | lncRNA | downstream | 278099 | 5277903 ~ 5278903 (+) | True | XLOC_008279 |
| TCONS_00018884 | lncRNA | downstream | 468294 | 5468098 ~ 5470851 (+) | False | XLOC_008289 |
| TCONS_00018885 | lncRNA | downstream | 468556 | 5468360 ~ 5471508 (+) | True | XLOC_008289 |
| TCONS_00018886 | lncRNA | downstream | 841753 | 5841557 ~ 5853342 (+) | True | XLOC_008291 |
| TCONS_00016646 | mRNA | upstream | 3125 | 4969128 ~ 4985077 (+) | True | XLOC_008273 |
| TCONS_00016645 | mRNA | upstream | 352383 | 4632782 ~ 4635819 (+) | True | XLOC_008272 |
| TCONS_00016644 | mRNA | upstream | 1062213 | 3825117 ~ 3925989 (+) | True | XLOC_008267 |
| TCONS_00016643 | mRNA | upstream | 1171445 | 3808996 ~ 3816757 (+) | True | XLOC_008266 |
| TCONS_00016642 | mRNA | upstream | 1191384 | 3790556 ~ 3796818 (+) | True | XLOC_008265 |
| TCONS_00016649 | mRNA | downstream | 28804 | 5028608 ~ 5074983 (+) | True | XLOC_008275 |
| TCONS_00016650 | mRNA | downstream | 86534 | 5086338 ~ 5106171 (+) | False | XLOC_008276 |
| TCONS_00016651 | mRNA | downstream | 88406 | 5088210 ~ 5106055 (+) | True | XLOC_008276 |
| TCONS_00016652 | mRNA | downstream | 116375 | 5116179 ~ 5148793 (+) | False | XLOC_008277 |
| TCONS_00016653 | mRNA | downstream | 132635 | 5132439 ~ 5148793 (+) | True | XLOC_008277 |
| TCONS_00016634 | other | upstream | 1481779 | 3506309 ~ 3506423 (+) | True | XLOC_008259 |
| TCONS_00016623 | other | upstream | 2302496 | 2685055 ~ 2685706 (+) | True | XLOC_008246 |
| TCONS_00016622 | other | upstream | 2313612 | 2673935 ~ 2674590 (+) | True | XLOC_008245 |
| TCONS_00016611 | other | upstream | 2629577 | 2358511 ~ 2358625 (+) | True | XLOC_008239 |
| TCONS_00016606 | other | upstream | 3114424 | 1873658 ~ 1873778 (+) | True | XLOC_008236 |
| TCONS_00016665 | other | downstream | 855307 | 5855111 ~ 5855225 (+) | True | XLOC_008292 |
| TCONS_00016677 | other | downstream | 1559246 | 6559050 ~ 6559185 (+) | True | XLOC_008299 |
| TCONS_00016680 | other | downstream | 1678717 | 6678521 ~ 6727082 (+) | True | XLOC_008301 |
| TCONS_00016681 | other | downstream | 1770782 | 6770586 ~ 6772120 (+) | True | XLOC_008302 |
| TCONS_00016699 | other | downstream | 3683018 | 8682822 ~ 8682937 (+) | True | XLOC_008317 |
