RNA id: TCONS_00016649


Basic Information

Item Value
RNA id TCONS_00016649
length 3390
RNA type mRNA
GC content 0.46
exon number 15
gene id XLOC_008275
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5028608 ~ 5074983 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAGATTTCGACCGAGACTTTAACAGCTTGATTAGATTCACTCTGCATCTTTCCACGCCACTGCTGCACGGATAGTGACGTCACCCTCCATCAGCGCGCGCACGCCGCGCAGGTAAACAATAATAGAGCCgaaggaggagaaggagaaggagAGCAGCTCGAGACCAAACAAATGCGAAATCTGACCGCTCGGGCCAAACGCGGATTTACACGCAGCACATTTTATAGGAATGGCATGTCTCATGGCAGCCTTTTCATTCAACAACACCACAGTTACCAACTCCATCATAATGAATACAAATGGACCTCCTGATCTCATGCTTGACCCCAGAACCGTGTGTGTTTCCATTGATGAAATGATGTCCAACCATGTCAGCAGTCAACAAACACCACTGTTACATGCACACCTGAAAAAAGTGGAGAACAATCTGACCGAGGCGCAGAGGTTCTCATACCTGCCTCGCAGACCCGCAGTCAACATCGAATTCAAAGACCTCTCGTATTCCGTTCCTGAAGGACCATGGTGGAGGAAAAAAGGTTACAAGACCCTTCTGAAAGGGATCTCTGGGAACTTCACCGGTGGAGCTTTGGTGGCCATCATGGGACCCTCTGGGGCTGGGAAATCTACACTAATGAACATTCTAGCAGGTTACAGGGAAACCGGCATGAAGGGGGAGATCCTGATTAACGGGCATCCAAGAGATCTGCGCTCTTTCAGGAAAGTGTCCTGCTACATCATGCAGGATGACATGCTCCTCCCGCACCTCACTGTGCAGGAAGCCATGATGGTATCAGCTAATCTCAAACTCCAGGAAAAGGATGAAGGCAGACGTGAAATGGTTCGGGAAATCTTGACGGCTCTTGGCTTATTGGAATGTGCCAAAACACGCACATCGCACCTCTCTGGAGGCCAGAGGAAGCGTTTGGCCATCGCCCTGGAGCTGGTCAACAACCCGCCTGTCATGTTCTTTGATGAGCCCACCAGTGGCCTGGACTCGTCCTCCTGCTTTCAGGTGGTGTCTCTGATGAAGGCTCTCGCTCAGGGTGGAAGAACCGTCATCTGCACAATACACCAGCCCAGCGCTAAAGTCTTCGAGCTCTTCGACAAGCTTTATGTCCTCAGTCAAGGCCAGTGTATTTACAGAGGAAAAGTGTCAAGTTTAATCCCGTATCTGCGAGATCTGGGACTCAGCTGTCCCACATATCACAACCCTGCAGACTTCATAATGGAGGTGGCGTCTGGTGAATACGGTGATCAGACAGCTCGTCTGGTGAAAGCTGTGCAGGAGCACAAGTGCGAGAAAGACTACAAAACTGAAATGAATGGCAACGGAGTCCACAATCCATTCCTGTGGCATAGACCATCCGATGAGGACTCTTCATCTTCAGAGGGATGCCACAGCTTCTCTGCCAGCTGTTTGACGCAGTTCTGCATCCTCTTCAAGAGAACTTTCCTCAGCATCATGAGAGATTCGGTGTTGACTCACTTGCGGATCATGTCTCATCTTGGCATCGGGATTCTGATCGGGCTTTTGTATCTGGGCATCGGCAACGAGGCCAAGAAAGTCCTCAGCAACTCCGGCTTCCTGTTCTTTTCCATGCTGTTCCTCATGTTTGCAGCTTTGATGCCCACCGTTCTCACCTTTCCACTTGAGATGGGTGTGTTTTTGAGAGAGCATCTAAATTACTGGTACAGTCTGAAGGCTTACTACTTAGCCAAAACAATGGCGGACGTCCCGTTTCAGATTGTGTTTCCAGTGGCGTACTGCAGTATAGTGTACTGGATGACATCACAGCCTTCAGACGCGGTTCGCTTCATTCTTTTCCTGGCTTTAGGGACGCTCACGTCACTGGTTGCACAGTCacttgggctacttatcggagcAGCATCCACATCTTTACAGGTGGCAACTTTTGTGGGTCCTGTTACAGCCATCCCGGTGCTGCTGTTTTCAGGCTTTTTTGTCAGTTTTGACACCATCCCAAAATACCTCCAATGGATATCGTACATATCTTATGTCAGGTATGGTTTTGAAGGGGTAATTCTGTCCATCTACGGGCTGGACCGTGAGGACCTGCACTGCGACAAAGACGAAACCTGCCACTTTCAGAAGTCTGAAGCCATTCTGAAGGAGCTGGACGTTGAGGACGCAAAGCTCTACATGGACTTCATTGTCCTGGGCATCTTCTTTATTTCACTCCGTCTGATCGCCTACTTCGTCCTCCGATACAAGATCAGTGCTGAGAGGTAGACACTTGAAGGATGTGATGGAGAAAGAGTACTGCTGAGACTTTCTTGCCCAGGCAGGGCCAGGCTGAGGAAGCCAAAGCAAAGAGGGTTCGTCCCTCCAAAACAACCATCGCCATGTTTTCCCTCACAGGACCAAAACCTGGGCTGAACTTGAAGTCACAGTATGTAGCTGCCCAGCTTTTATGCGtgcttttttaaagaaacaaagaGCGTAGAACGCAACCAAACATCTGCATGGATAGATTAAGAAACATGGGGGGCACTCCGATGAAACTCATAGACGCTGATGGTGAGACATATTCACTGGAGAAGTTCTGACTTTGGATAAATAAAGGTAATGTGCTAGTCTCTGTAATCCTTTTGGAGAGCTGGAAACTTTTGTCTTTCGCCCTTGTGAAAAAGAAGTGTGCTTATCTGTGTTAAATGTGCTCtttttgtatagttttatacTTGTagctaatattattttaataacgaTAAAGCCCACACTTTAAGGTGTACATGACTGCATCTCTTGGAACACTCcagtttattttggaaatatgattattttacaaCTCCTCTAGAGTTAGACAGTTGAGTTTGACTATTTTTGAATCCATCCAGCCGATTTCtagacacttttagcttagctaagcataaatcacaaaatcagattagaccgttagcctcttgcttaaaaatgattttttttgatcatttatggtatgtagtatggcaataaatgtcatgtaaaatggcatttaaactcacgttattagcatttaaccctgaataaagcacatgaggtgtacctgaggtgatcaatATCAGTTTGTCCTGTTgtttagctgcaagaaataaaagctatttctaaaataaaataaataaaacatcaagtgttggttaggacaaaagatcagctttaatgtaaaaaatattccttctatcgcgtgccgttgcttttatttagaatatgACTGATAGTCAGGCACACTACCGTCAGTGTCCTCAATCTTGCAACCtgcacttgtgtgtgttttgaaccaacAGTGCAATACCtacttcaaccactgggtgtcaaacttacatactgcatcttAATTTTTAGATagttggactaaaaacaagacaaaatctgtttctaaaagtaaaaaaaa

Function

GO:

id name namespace
GO:0010874 regulation of cholesterol efflux biological_process
GO:0002040 sprouting angiogenesis biological_process
GO:0042632 cholesterol homeostasis biological_process
GO:0033344 cholesterol efflux biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0034041 ATPase-coupled sterol transmembrane transporter activity molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
ko02010 ABC transporters
ko05417 Lipid and atherosclerosis
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-070424-84 Predicted to enable ABC-type sterol transporter activity. Acts upstream of or within regulation of cholesterol efflux and sprouting angiogenesis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Orthologous to human ABCG1 (ATP binding cassette subfamily G member 1).

Ensembl:

ensembl_id ENSDART00000092809

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018882 lncRNA upstream 474180 4553896 ~ 4554428 (+) True XLOC_008271
TCONS_00018754 lncRNA upstream 496643 4528549 ~ 4531965 (+) True XLOC_008270
TCONS_00018879 lncRNA upstream 707593 4313091 ~ 4321015 (+) False XLOC_008269
TCONS_00018755 lncRNA downstream 181518 5256501 ~ 5256782 (+) True XLOC_008278
TCONS_00018883 lncRNA downstream 202920 5277903 ~ 5278903 (+) True XLOC_008279
TCONS_00018884 lncRNA downstream 393115 5468098 ~ 5470851 (+) False XLOC_008289
TCONS_00018885 lncRNA downstream 393377 5468360 ~ 5471508 (+) True XLOC_008289
TCONS_00018886 lncRNA downstream 766574 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00016647 mRNA upstream 28798 4988189 ~ 4999810 (+) False XLOC_008274
TCONS_00016648 mRNA upstream 28804 4988202 ~ 4999804 (+) True XLOC_008274
TCONS_00016646 mRNA upstream 43531 4969128 ~ 4985077 (+) True XLOC_008273
TCONS_00016645 mRNA upstream 392789 4632782 ~ 4635819 (+) True XLOC_008272
TCONS_00016644 mRNA upstream 1102619 3825117 ~ 3925989 (+) True XLOC_008267
TCONS_00016650 mRNA downstream 11355 5086338 ~ 5106171 (+) False XLOC_008276
TCONS_00016651 mRNA downstream 13227 5088210 ~ 5106055 (+) True XLOC_008276
TCONS_00016652 mRNA downstream 41196 5116179 ~ 5148793 (+) False XLOC_008277
TCONS_00016653 mRNA downstream 57456 5132439 ~ 5148793 (+) True XLOC_008277
TCONS_00016654 mRNA downstream 202778 5277761 ~ 5280100 (+) False XLOC_008279
TCONS_00016634 other upstream 1522185 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 2342902 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 2354018 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 2669983 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 3154830 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 780128 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 1484067 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 1603538 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 1695603 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 3607839 8682822 ~ 8682937 (+) True XLOC_008317

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000092_01912280_01944807.mRNA True 2585 mRNA 0.44 17 CI01000092 1912280 ~ 1945217 (+)
bowfin (Amia calva) AMCG00016448 True 2040 mRNA 0.55 17 CM030122.1 20104916 ~ 20126284 (+)