RNA id: TU259481


Basic Information

Item Value
RNA id TU259481
length 1960
RNA type TUCP
GC content 0.42
exon number 3
gene id G228651
representative True

Chromosome Information

Item Value
chromosome id CI01000053
NCBI id null
chromosome length 7014373
location 5784483 ~ 5787690 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTGCATTCAACAAATGAATCCATCATTTTATTTACATATTAAAATGAGTGAACCACATAGCTTACAAAAGATCTTATCAAAACAAATCTAATTTAAAGTGCATCGCTTGAATGAAAATAGATAAATAAATATTCAAAAAACAGGAAATAAAATAACACTTCATAAAAAAATAAAATACATTAGCAAGTGGCTTTAGTGCCTTTATCTATCGCAACACAATTTAACTTAATTTTAAAATGACCTAAGATCACAGTTTGTCAGGTCTTTGCCCTTTAAAACTTGTCTGAGACTGACAATTAGACTAACTTCATGGAAAAACTTGACATTTACCACACAGAAGACTAACCACACGTCACAGCCATATATGGTCACAGCATCAGTCACTGCAGTCAAATGGAACATTGACATTTCAGATGATCTGCAGACATACATCCTAAACATATACTATTGTTGAAGGTGAAATGAAAATGCTGTAGTAGACTATATTACTCTTAGAAGATTGGCAGGACAGAAGTTCTTCGTCTGTTTCATCAATATCTCAGATACAAGTTATCTTGGGTTGATGTAATAAGATCACACTAGTAGTCAAGTACACAATGTCACAATGTCACAATGACATGTGACTATTATATTTTCCATGAGGGCTATTGGGTGTAGCGGTGTGTCAGTGACGCCACTATCGTTCGGAAACGACAACTATTTATAGTTTGTATTGCCATAAACAATCAAGAACAGGTAGTCAGTTGATGCCATCTACAGCTTTATCCAAACAAGTTGAGTTATTGCCATGGTGTTAGTTAAAAGGGTGGTTGATCTCCTTATTTAGAGTCTGTCAGTTTGTACACACATAGCATCAAACAAAAACTTCCTTTAAGCACCTTTGTAGATTTGTCACAGTCTTTGAGGTCAAAGCTGCAACCAGTATATCTGAAAGTTAGTGAGGCCAGTTCAAGATTTCTTGACTGATACTGTCCGTACGCTGATACTAAAATGCAGTGCCACTGTTTTCTCTGTCTAGCACAGAATAAGGGCACAAAACGTCTGTCTCGAACTGCAGAAGTTGGCCCATGAAAGCTAGATTGGGTGAGATGACTTGTCGGCGGCGTTTTACAAAGTCAAAGGCCTCGTCCAGACGGACACGTCGAGCGTGTATGAGGTACGCTAGGCAGATGGTGGCTGACCGGGAGATTCCTGCTTGACAGTGGACCAGCACTCGCCCGCCACTCTCTTTTATCGAATCTGCAGATGCAATGAAGGTTTGGACAGGAAGAGGATACGTTGAGCACAGCCGTGATCCCACATCGCTCCAGAGTCTCCCGTCTGGACGAGTGATGTGCACTGCCCAGGAAGAGGAAGGGGAGGATTTCAACTGGACCACCCTGGACCACCACCGGAGAAAAGTCCCCGTTCCGCAGCTGGGCCAGAAGCGCCTTGTCGGCCACCAACCATTCCAGAGACACCACGGAGCTCTTGGATCTCCGTCTCAGCATGGAATTCCAGTTGACGTTGCGGGACTCGAGGATGTGCGTTCGGGAGAAGGCAAGGAAAGGCCGACAGTCCAACACGATGCATCCCCCAGACGCGAAGAGCTCAGAGGGAGTCCGCAAAATATGAACTAACTCACTACCTGAGATCTCGAGAGGGTCGCCAATACCCATGACCTCTCCAGACAAACAACAGTCGTGAGTAGAAACGGATATTCTTCACAGCATCAACAACAGCGCGTTCAATATGGGAACGTATTTTTTTGCCCACTGGAAATTAAGTACTATGAACAATAACAAAAAAAGATAGATGACACAAAACAATATTATTGTGTCCGTAGAGGCCTGGTGTGTTTTCACAGTATTATTACTTTAAAATGAACATAGAATAATTTACTCTTTAACTGTAAATATATAATCTTCGTCTGTATTTCGTCAAAGCTTAGTTTTAAAGTCCTTTATTTGTCAGCAGATG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU259463 lncRNA downstream 21930 5762299 ~ 5762553 (-) True G228641
TU259461 lncRNA downstream 26887 5757254 ~ 5757596 (-) True G228639
TU259444 lncRNA downstream 117722 5666403 ~ 5666761 (-) True G228622
TU259442 lncRNA downstream 120751 5663499 ~ 5663732 (-) True G228620
TU259441 lncRNA downstream 121321 5662954 ~ 5663162 (-) True G228619
TU259498 lncRNA upstream 11379 5799069 ~ 5799843 (-) True G228666
TU259501 lncRNA upstream 15300 5802990 ~ 5803250 (-) True G228668
TU259522 lncRNA upstream 34805 5822495 ~ 5822814 (-) True G228689
TU259524 lncRNA upstream 35796 5823486 ~ 5823803 (-) True G228691
TU259533 lncRNA upstream 52157 5839847 ~ 5840102 (-) True G228700
CI01000053_05732296_05750809.mRNA mRNA downstream 33674 5731378 ~ 5750809 (-) True CI01000053_05732296_05750809
CI01000053_05692640_05695728.mRNA mRNA downstream 88755 5692635 ~ 5695728 (-) True CI01000053_05692640_05695728
CI01000053_05690377_05690558.mRNA mRNA downstream 93706 5690377 ~ 5690777 (-) True CI01000053_05690377_05690558
CI01000053_05675892_05686424.mRNA mRNA downstream 98059 5674979 ~ 5686424 (-) True CI01000053_05675892_05686424
CI01000053_05621226_05622308.mRNA mRNA downstream 161985 5620409 ~ 5622498 (-) True CI01000053_05621226_05622308
CI01000053_06038638_06043939.mRNA mRNA upstream 250646 6038336 ~ 6043939 (-) True CI01000053_06038638_06043939
CI01000053_06060129_06071679.mRNA mRNA upstream 271919 6059609 ~ 6071679 (-) True CI01000053_06060129_06071679
CI01000053_06162569_06179766.mRNA mRNA upstream 374389 6162079 ~ 6180102 (-) True CI01000053_06162569_06179766
CI01000053_06287804_06296687.mRNA mRNA upstream 499524 6287214 ~ 6296687 (-) True CI01000053_06287804_06296687
CI01000053_06308157_06310323.mRNA mRNA upstream 519912 6307602 ~ 6310466 (-) False CI01000053_06308157_06310323
TU258305 other downstream 1696743 4087237 ~ 4087740 (-) True G227604
TU257616 other downstream 2231512 3552883 ~ 3552971 (-) True G227041
TU257615 other downstream 2232505 3550333 ~ 3551978 (-) False CI01000053_03551506_03551965
TU257617 other downstream 2232505 3550659 ~ 3551978 (-) True CI01000053_03551506_03551965
TU257528 other downstream 2787215 2996717 ~ 2997268 (-) True G226963
TU259584 other upstream 143902 5931592 ~ 5932241 (-) True G228750

Expression Profile