RNA id: TCONS_00016652


Basic Information

Item Value
RNA id TCONS_00016652
length 3343
RNA type mRNA
GC content 0.43
exon number 14
gene id XLOC_008277
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5116179 ~ 5148793 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAGTGAGTTGACTTGATAGTTTGCAGCCTTCGTCAAATGTGACCTATTTGAATGTGATGACGTCACGCCGTTAATCTTTAATTTCCGAGCACGCTGTGCGCAATAACAGTCAGTCGCACCGGTTTGAAGCAGCTGGATTTGAAGTTCCCCCCTTAGAAGTCTGGATCTGCCGCTGAAATGGGGTCCAACGGAGACCTCAACGCGAACTCACAGTGTCTTAGTGCTACTGGCGACCCGGTGCTGGACAAAGCGGTCAGTCAGTGGATGACCTGGGATAAGaaTCCTCTGACGCGGGAACAAATCGAGTCTTTGGTGCAAGAGGGTCGTGTGGTGGAGCTCAGGAGGAGATTGTGCTCCAGGATGACGTTTGGAACCGCTGGATTAAGAGCCGCGATGGGAGCAGGGTTTGCTCGCATTAATGACCTGACTATCATTCAGTCTACACAGggaTTGTACAAATACTTGGCCAAATGTTTCCCTGACCTGAAAACGAGAGGGCTGGTGGTTGGTTATGACACTCGTGCCCAAGCAAGCAGTGGCTGCACCAGTGAACGACTTGCAAAGTTGACTGCCGCTGTTATGCTTTGTAAAGATGTTCCTGTCTATCTGTTCTCTACGTATGTGCCTACCCCATTTGTGCCGTATGCTGTGATGAAGTATGGAGCTGCAGCTGGAGTCATGATCACTGCTTCTCATAACAGAAAAGAGGACAATGGATACAAGGTTTATTGGCACAATGGCGCACAGATAGCCTCGCCGCATGATAAGGAGATCTTACATTGCATTGAGGAGAGTGCTGAACCCTGGGCTGAGTCCTGGAATGAGGACCTGGTTGAGAACAGCCTGCTAAAGCGAGACCCACTGGAGGACGTCTGCCACTGGTACATGGAAGAGCTAAACACTCTCTGCTTCCACAGAGAACTTAACGCAAAGTCTCCTCTGAAGTTTGTCCATTCATCATTCCATGGTGTGGGTCACAACTATGTCCAGAGGGCTTTTCAGCAGTTTGGTTTCCCGCCGCCAATTCCTGTCCCAGAGCAGAAAGATCCAGATCCAGATTTTTCCACAGTCAGCTGTCCTAACCCAGAGGAAGGAGAGTCAGTCTTAGAGCTTTCTCTTCGTTTGGCTGAAAGAGAAAAAGCCCGTATTGTTGTAGCCACAGACCCTGATGCAGATCGCTTGGCTGTTGCAGAGCAGAATGATAATTGCGGATGGAAAGTGTTCACAGGGAATGAATTGGCAGCATTGCTTGGCTGGTGGATGTTGTTTAACTGGAAGGAAGCACACCCTGACCCAGCAGACACTGAGAGAGTGTATATGCTGGCCACCACTGTCTCATCCAAAATACTCGAGGCCTTTGCACGCATCGAGGGCTTCCATTTTGAGGAAACATTGCCTGGCTTTAAATGGATTGGAAACAGAATCCATGAACTAAAAAAAGCAGGAAAGGAAGTAATTTTTTCCTTCGAAGAATCCATTGGGTTTTTGTGTGGGAACATGGTCCTTGATAAGGATGGAGTCAGTACAGCAGCTGTTGTGGCTGAAATGGCGTCTTATCTACACACCAAAAACCTTTCCTTGAACCAACAACTATGTAACATCTACGAAATATACGGGTATCACATTTCTCGAACGTCCTATGTCCTCTGCAATGACCCACCCACTATTCATAGAATTTTTAGTCGCCTACGCAACTTTGGAGGCCAGGGTGTGTATCCAACGTCATGTGGCGATTACTGCATCACACACATCCGAGATGTGACCACTGGTTACGACAGCAGTCAGCCTGACAAGAAATGTGTCCTTCCATTGTCAAAAAGTAGCCAAATGCTCACCTTCACGTTTCAGAATGGCATCGTTGCCACACTTAGGACCAGTGGAACCGAGCCAAAGATCAAGTATTACACAGAATTCTGCGCATCACCAGGAGAacgTGATATCTCTAGCCTGGACGAGGAGTTAAGAAAAGTTGCAGCTGCCCTGGTTGAAGAGTTTCTTGAACCGGACAAGAACGATCTCCTTGGCAGATCAGTATAGCTTTATTTGTCATGGGCAACTCCAGTAAAAACCTGTCCCAAAGACCTGTCAGCAAACCGTCCTGTGAATGTTGTTTTAGCACTGTGAAATTAGAATCACAATCAACTCATGGCTCTCAAAAAGAAATGAAAACTGATCATTCATTTGGTGGATTATATATGGCAAGAAATATTGCCGtcatctttttcttttcttttttattgttatttatttatcacaGTGAAACAAGTTTATCCCAGCAAGGAAAATCTCcaatgcttttatttcagttcagtacCCGATGCTGCATTATTACTATCAATTCTGTTTTATTAGGCCCGCCAGATCACTCATTTGTAGAAATTATTTTAACCCCTTGTCTGTTTCTCAGATGTGTAGCTGAGAGCTACTGCTGCTAAATTTTAAAGCTCTGTGAGCATGTATGCGTGTTGTGCTCTCATAAACCTGTGtccatattctaaaaaaaaaagactcttaTATGTTTTGATGCTTGTACTCTTTATGTAGTGTGTAATATGCATTGATAATCAGGAGTCAAGATGGGCAGCATCCTGTTGGTCCCTTTAAGTTTTGCTGGCTTTGATATGCTGGATACGCACAGGGTAAGTTAATGAATGGAAGAGAGAATGGACGTTTTGTTTTCGAAGCTTCTGATTTTTGCTGTACATAGCTTAATAGGCATATTTGAATTTGTGTGGGTTATATATACACATCCTTCAAGTTTCAGTTAATTGTAAGCGGCATTCAGGTTAAGCAAGGCGTTTCACTCTACTGATAAATAAAGACCAGAAGGATTTTGATCCTAAACAAGAACTTATAAGATCATTTAGAAAAGAGAGGCTCATCAAACTGTTTGAAAGAAGCCAGTTATTTTGCCAGTTTCTTcactaaaaaaatataaataaataaaaattaagtttgtCATTGTCTTAACAATGACTTTGTGCCATTTAATAACCTTCTTGCGATTTTATTGTGGCACTAAGTGCATTTCAAACATCCTCAGTGCATTGTTGATTCAAGATTTATTCAATGAAATGAAATGTGCAGTATATTATTGTTTTGAAGAGTGATACATTGGCATTTTACCCTTTCACTGGTCGAAAGGCTCAAATACAGCGTACCTTATTTTTGAGGAAGTTATGAGAAAACCAAAGGAAGAGATGTTTTGTAGAGTGTAACATGTACCAGTTTCTTTTTTTGCCTTGTTTCAAGTACACTATTTATTTGCAGTGCAACTGTGACATTCCTTAAATGTATATTATGTGTACATCCCTCTACAAATAAATTGCTGTATTAGTAA

Function

GO:

id name namespace
GO:0071704 organic substance metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0016868 intramolecular transferase activity, phosphotransferases molecular_function

KEGG:

id description
ko00500 Starch and sucrose metabolism

ZFIN:

id description
ZDB-GENE-041008-205 Predicted to enable intramolecular transferase activity, phosphotransferases and metal ion binding activity. Predicted to act upstream of or within glucose metabolic process. Orthologous to human PGM2L1 (phosphoglucomutase 2 like 1).

Ensembl:

ensembl_id ENSDART00000101937

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018882 lncRNA upstream 561751 4553896 ~ 4554428 (+) True XLOC_008271
TCONS_00018754 lncRNA upstream 584214 4528549 ~ 4531965 (+) True XLOC_008270
TCONS_00018879 lncRNA upstream 795164 4313091 ~ 4321015 (+) False XLOC_008269
TCONS_00018755 lncRNA downstream 107708 5256501 ~ 5256782 (+) True XLOC_008278
TCONS_00018883 lncRNA downstream 129110 5277903 ~ 5278903 (+) True XLOC_008279
TCONS_00018884 lncRNA downstream 319305 5468098 ~ 5470851 (+) False XLOC_008289
TCONS_00018885 lncRNA downstream 319567 5468360 ~ 5471508 (+) True XLOC_008289
TCONS_00018886 lncRNA downstream 692764 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00016650 mRNA upstream 10008 5086338 ~ 5106171 (+) False XLOC_008276
TCONS_00016651 mRNA upstream 10124 5088210 ~ 5106055 (+) True XLOC_008276
TCONS_00016649 mRNA upstream 41196 5028608 ~ 5074983 (+) True XLOC_008275
TCONS_00016647 mRNA upstream 116369 4988189 ~ 4999810 (+) False XLOC_008274
TCONS_00016648 mRNA upstream 116375 4988202 ~ 4999804 (+) True XLOC_008274
TCONS_00016654 mRNA downstream 128968 5277761 ~ 5280100 (+) False XLOC_008279
TCONS_00016655 mRNA downstream 132065 5280858 ~ 5284248 (+) True XLOC_008280
TCONS_00016656 mRNA downstream 138910 5287703 ~ 5289199 (+) True XLOC_008281
TCONS_00016657 mRNA downstream 144992 5293785 ~ 5295023 (+) True XLOC_008282
TCONS_00016658 mRNA downstream 150611 5299404 ~ 5300815 (+) True XLOC_008283
TCONS_00016634 other upstream 1609756 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 2430473 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 2441589 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 2757554 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 3242401 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 706318 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 1410257 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 1529728 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 1621793 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 3534029 8682822 ~ 8682937 (+) True XLOC_008317

Expression Profile

//