RNA id: TCONS_00016654


Basic Information

Item Value
RNA id TCONS_00016654
length 2340
RNA type mRNA
GC content 0.32
exon number 1
gene id XLOC_008279
representative False

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 5277761 ~ 5280100 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTCTATTAAATaggtttttcattcattaatattgtatatTAGATAGGTATATAATCTTGAGGTAAATGGACTCTGTTTACATGGTTTTTCCAAATGATTTTTCTTTAAGCTGaggagatttttatttatttatttatttatcttttgcaTTGGATGATTTCCTCTGCATGAAATGTGTATGTAAGGAAGACACCTTTCTTCAATTGTTTGAAACAAACCGTTAATATGGAAAACAGTGCAAATTTTACAACTATCATACTGACTGGATATCTTCAACTGGATTTCAACATGAAGTActtgttgttttttgtattaaCTGTGCTGTATTTGACAGTGGTTTTTGCCAACAGCTTTCTTATTGGTGTCATCTTTTCAGCAAAAACCCTTCATAAGCCAATGTACCTGCTTCTCTGTAGTTTGTTTGTTAATGAACTGTATGGCAGCACAGCTTTATTTCCTTCACTTCAGGTTAACTTAATTTTGAATAGCAACGAAATTTCTCTTATATATTGTTATTTACAGATTTTCTGCTTATACACATATGCAATGATAGAATTTTGTAACTTAGCAGTCATGTCTTTTGATAGATATGTGTCGATCTGTTATCCATTACAGTATAACAGAATCATGACCCCTTTTAGAGTGGGTTTGTTAATTGCTTTGGTTTGGACCTACTGTTTCATTcaatttttaatacttttgtCTTTTAATTTTAAGTTGCAACTGTGTGGAAATGTAATGGAGAAAGTGTGGTGTGACAACTACTTACTTGTGAAACTGGCTTGTTTTAAAACCTCTCTGAATAATACTTACGGTATTTACGTTAATGTGATGACAGCACTGATCCCATTGGCGctcattttttattcatatacaAGAATTATCAAAATTTGCTTGAGTTTTTCTAAAGAAGCTAAGAAGAAGGCTCTAAGCACCTGCACCCCACACATTATATCTCTGTTAAACTTTTCTTTGGGCTGCTTCTTTGAAACACTTCAAAGCAGGTTTGATAATATTAGAATGCCAGCTCTGTTACGTGTAAtagtttcagtttattttttgatGTGTCCGCCACTGCTGAACCCTATAATGTATGGTTTAAGACTGAAAAATATCAGACTAGTATGTAAAAATTTGATGGTATCAAAGGTTGGTTTAACATAACACAGATGTATTTGGGTTTTTGATGTGCTTTAACCACCATCATTATGGTGTTTAATTGCATTTTaagaatgttttatatattaacctaccatgttaaataatttataaagatATATTTGCATATGATAAATCAGTTCCTTTTTGCTTCATATGAAAATGGTAGCAAATAGTACAAATGTTTGTAGTGAAACTGTTTTTCAAAGATATATCATTTTgacaattatattttttctttaacctTCCTGTCATGTTTGGGTCGAttctgaccgatttacaacttaaaacactcaTAAAACTTGTGTTTAACACCTGAGTGTCTCAAAgccttatgatatcctccacactgTGCACTTGAAAATATAGAAGTGATGAACACCCCTTTCACTGAATTTTCAGTATTTAAATCAGCGTTGTTACACCTGTGGCGTTCCCGGTCAAAAGGGACCACCATATGAAATCAATGGGTATCAAGACTATATTTATCCATCAGACATCCCTATACACACCACACCCCAACTCACTTCCTgacttactcacacacacacacacacacatattttagaCCCCTCTGCAGGTAttcaacccctaaacccaaccgtcattgggggataagcaattttactaaattgtatgaatgagattgtacaaatttatacgaattcaccattaaattaaaaagttacgaattgtcttGAGatgtctttctttttctttctttctttctttctttctttctttctttctttctttctttctttctttttatctttctttccttttttcttttttctttcttttttctttattcattctttctttctttttttcttttatctttttttctttgcttttttctttctttctttctttctttttttctttccttttttctttctttctttctttttctttctttctttctttctttctttctttctttctttcagctTAGCTGCAACTATTTCATTGGACTAGAACATTAccatctcactcaaaaataacCGAAGTATAACTAGTGCTAATGCTGTGGCCTTAATCCCCATCTATACCCTCAATCACATAGTACAAAGGAAAGGatgctgttttgtttgtgctttgctggttgataaatcattcagattCATTAAAATTTCAATTTGTTTGGTCAGACCCTGTAATTGTTATTTTAGAGAGC

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0050896 response to stimulus biological_process
GO:0007608 sensory perception of smell biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function
GO:0004984 olfactory receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-131121-386 Predicted to enable odorant binding activity and olfactory receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of smell. Predicted to act upstream of or within G protein-coupled receptor signaling pathway and sensory perception of smell. Predicted to be located in plasma membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000153954

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018755 lncRNA upstream 20979 5256501 ~ 5256782 (+) True XLOC_008278
TCONS_00018882 lncRNA upstream 723333 4553896 ~ 4554428 (+) True XLOC_008271
TCONS_00018754 lncRNA upstream 745796 4528549 ~ 4531965 (+) True XLOC_008270
TCONS_00018879 lncRNA upstream 956746 4313091 ~ 4321015 (+) False XLOC_008269
TCONS_00018884 lncRNA downstream 187998 5468098 ~ 5470851 (+) False XLOC_008289
TCONS_00018885 lncRNA downstream 188260 5468360 ~ 5471508 (+) True XLOC_008289
TCONS_00018886 lncRNA downstream 561457 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00018887 lncRNA downstream 878909 6159009 ~ 6160503 (+) True XLOC_008297
TCONS_00018756 lncRNA downstream 1505549 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00016652 mRNA upstream 128968 5116179 ~ 5148793 (+) False XLOC_008277
TCONS_00016653 mRNA upstream 128968 5132439 ~ 5148793 (+) True XLOC_008277
TCONS_00016650 mRNA upstream 171590 5086338 ~ 5106171 (+) False XLOC_008276
TCONS_00016651 mRNA upstream 171706 5088210 ~ 5106055 (+) True XLOC_008276
TCONS_00016649 mRNA upstream 202778 5028608 ~ 5074983 (+) True XLOC_008275
TCONS_00016655 mRNA downstream 758 5280858 ~ 5284248 (+) True XLOC_008280
TCONS_00016656 mRNA downstream 7603 5287703 ~ 5289199 (+) True XLOC_008281
TCONS_00016657 mRNA downstream 13685 5293785 ~ 5295023 (+) True XLOC_008282
TCONS_00016658 mRNA downstream 19304 5299404 ~ 5300815 (+) True XLOC_008283
TCONS_00016659 mRNA downstream 41512 5321612 ~ 5323546 (+) True XLOC_008284
TCONS_00016634 other upstream 1771338 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016623 other upstream 2592055 2685055 ~ 2685706 (+) True XLOC_008246
TCONS_00016622 other upstream 2603171 2673935 ~ 2674590 (+) True XLOC_008245
TCONS_00016611 other upstream 2919136 2358511 ~ 2358625 (+) True XLOC_008239
TCONS_00016606 other upstream 3403983 1873658 ~ 1873778 (+) True XLOC_008236
TCONS_00016665 other downstream 575011 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016677 other downstream 1278950 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016680 other downstream 1398421 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016681 other downstream 1490486 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016699 other downstream 3402722 8682822 ~ 8682937 (+) True XLOC_008317

Expression Profile

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