Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00016679 |
| length | 635 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 5 |
| gene id | XLOC_008300 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007126.7 |
| NCBI id | CM002899.2 |
| chromosome length | 48040578 |
| location | 6652396 ~ 6666303 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0000027 | ribosomal large subunit assembly | biological_process |
| GO:0006364 | rRNA processing | biological_process |
| GO:0042254 | ribosome biogenesis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0005654 | nucleoplasm | cellular_component |
| GO:0005730 | nucleolus | cellular_component |
| GO:0008097 | 5S rRNA binding | molecular_function |
| id | description |
|---|---|
| ko03009 | Ribosome biogenesis |
| id | description |
|---|---|
| ZDB-GENE-051120-21 | Predicted to enable 5S rRNA binding activity. Predicted to be involved in rRNA processing and ribosomal large subunit assembly. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in nucleoplasm. Predicted to be active in nucleolus. Orthologous to human NOP53 (NOP53 ribosome biogenesis factor). |
| ensembl_id | ENSDART00000160136 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00018887 | lncRNA | upstream | 500840 | 6159009 ~ 6160503 (+) | True | XLOC_008297 |
| TCONS_00018886 | lncRNA | upstream | 808001 | 5841557 ~ 5853342 (+) | True | XLOC_008291 |
| TCONS_00018885 | lncRNA | upstream | 1189835 | 5468360 ~ 5471508 (+) | True | XLOC_008289 |
| TCONS_00018884 | lncRNA | upstream | 1190492 | 5468098 ~ 5470851 (+) | False | XLOC_008289 |
| TCONS_00018883 | lncRNA | upstream | 1382440 | 5277903 ~ 5278903 (+) | True | XLOC_008279 |
| TCONS_00018756 | lncRNA | downstream | 119417 | 6785649 ~ 6786055 (+) | True | XLOC_008304 |
| TCONS_00018888 | lncRNA | downstream | 201044 | 6867276 ~ 6875548 (+) | True | XLOC_008306 |
| TCONS_00018757 | lncRNA | downstream | 474178 | 7140410 ~ 7140882 (+) | True | XLOC_008308 |
| TCONS_00018758 | lncRNA | downstream | 1068257 | 7734489 ~ 7737531 (+) | True | XLOC_008311 |
| TCONS_00016691 | lncRNA | downstream | 1139547 | 7805779 ~ 7805920 (+) | True | XLOC_008312 |
| TCONS_00016676 | mRNA | upstream | 167728 | 6459847 ~ 6493615 (+) | True | XLOC_008298 |
| TCONS_00016675 | mRNA | upstream | 179359 | 6459847 ~ 6481984 (+) | False | XLOC_008298 |
| TCONS_00016672 | mRNA | upstream | 542675 | 6109861 ~ 6118668 (+) | False | XLOC_008296 |
| TCONS_00016682 | mRNA | downstream | 107644 | 6773876 ~ 6784279 (+) | False | XLOC_008303 |
| TCONS_00016683 | mRNA | downstream | 108762 | 6774994 ~ 6784965 (+) | True | XLOC_008303 |
| TCONS_00016684 | mRNA | downstream | 120525 | 6786757 ~ 6807963 (+) | True | XLOC_008305 |
| TCONS_00016685 | mRNA | downstream | 388522 | 7054754 ~ 7057545 (+) | False | XLOC_008307 |
| TCONS_00016686 | mRNA | downstream | 390818 | 7057050 ~ 7058214 (+) | True | XLOC_008307 |
| TCONS_00016677 | other | upstream | 102158 | 6559050 ~ 6559185 (+) | True | XLOC_008299 |
| TCONS_00016665 | other | upstream | 806118 | 5855111 ~ 5855225 (+) | True | XLOC_008292 |
| TCONS_00016634 | other | upstream | 3154920 | 3506309 ~ 3506423 (+) | True | XLOC_008259 |
| TCONS_00016623 | other | upstream | 3975637 | 2685055 ~ 2685706 (+) | True | XLOC_008246 |
| TCONS_00016622 | other | upstream | 3986753 | 2673935 ~ 2674590 (+) | True | XLOC_008245 |
| TCONS_00016680 | other | downstream | 12289 | 6678521 ~ 6727082 (+) | True | XLOC_008301 |
| TCONS_00016681 | other | downstream | 104354 | 6770586 ~ 6772120 (+) | True | XLOC_008302 |
| TCONS_00016699 | other | downstream | 2016590 | 8682822 ~ 8682937 (+) | True | XLOC_008317 |
| TCONS_00016700 | other | downstream | 2065520 | 8731752 ~ 8731866 (+) | True | XLOC_008318 |
| TCONS_00016703 | other | downstream | 2372818 | 9039050 ~ 9039164 (+) | True | XLOC_008321 |
