RNA id: TCONS_00016683


Basic Information

Item Value
RNA id TCONS_00016683
length 1835
RNA type mRNA
GC content 0.36
exon number 5
gene id XLOC_008303
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 6773876 ~ 6784965 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAAATAGTTTAGTTTAGCTTTTCTTTAAaatgcagttctttatttttgtttgaaaaatttCTTTTATCTAAACttaattttctcttctttttttttgtggtttgcaTTAGTTTTACATTTCTTTGCTCAATAATCTAGGTTTCACTTGcaaatctatattttttaaaaggttaaTAAGGTTCTGTATTCCATATcctttacaaattatatattttaatctgTCTCTTTCAAAAGCGGCATGCCATGAGGAGATGTTTAGCACACAACTGTGCTGTTACTGTAAGGAGGGGTTTGCGTTCTGGTGCAACACCATCTGTCTTCACCAGGCTCTTACTAAAACTTGATCACTATTTCTATGATGTGGAGAGCTTTTTATATTTGAAAGAGTGGTGGAAGACAAAAGTGGTCAAGTTCCAGAATAAgtattTTGGTTATGTGCAAAAGAGGTATGGTGCTCAAATAGGAGCTGCATATTACATCCTGGCTATCAAAGGGAGCTTCAGATTTGCTGGCCAGTCTCAATGGTTTCGTCCAGACTCAACAGGAATGTTCAGCTTTATGAGGTCCCCTCATGGACAAATTGAAGAAGTGGATCTGAGTGGCACCCTAATAAACCTTAATGGACTCGGCAACCTTATATCCCAGAATAAACTGAAAACTCTCTCCTTACGAGGATGTCCGGAAGTGGACGACTGGTTCCTTGCTCGTCTTCACGTCTTTAGAGACAGTCTGGTGGAATTAGACCTGTCTGACTGCACTCATGTGACTGTAGGAGGGCTCGCTGCATTACAGAACCTCAGAAAACTAAAACGGCTGGACATTTCTGGACTTCCTCGACTTCAGTGTCCAGGTCTGGTCCGGATACTGTTGGAGGAAATGCTACCTCACTGTCAGGTCATTGGAGTTGAAAGTGAGCAGGGCATGATCCAGCCAGAAAGACAAGAGCCAACAGACATTGATGATGCTTCCACACAGAGTGGGCTGAGACGTTCATAATGGAGGCTTATGTAGCATCAAACAACTGTTCTGCCATTTTAACAAAGGGTTGTTCTGAATGTTATGTGCATGATTGTTGCAAATTTTATTGTAGATATAGATTATATAATGTTTTGAGACAAACACAATAAAAGTTTGTGTTGTAATgtgaaattttatttgttttacttttatgagATTTTGGTGGCAGGGTCATTCCTACTATTCAGTGCCATTTGTGTGTCCTAGGTATTATAtgcagaatatttaaaaatgcaatttaaaaaaattcttaaagcATGTCTTAAAGGATTATCTTTATCCACCATAGGACAAAATGATAAAActtaaattaagttgaaaataTTTCCTCAGTTAattgtattgtactgtactgtatttcAATGCATGCAGCTGAATTGCCATGTCCCAGGTCATGTACTGTACAGTGCgtaagtattcatagcgcttcactttttccacatttttttatgttacagccttattgcaaaatggattcaatttatttcctcaaaattttacacacaatacacacaacgacaatgtaaaaaaagagtttttgaaattattgcaaatttatttaaaattaaaaacttagtGATAAAAAAATGAGGGGTAAGGGTAGAATTGGGACTGGGGCTTTGTGTCCACCCTGTTAATCAACATATATTACACGTTTTTCTGGTTACTTGCAtccaaaaaactaaactaaactaacaaaattaaGCCACTTAAAAACAGGATTTAATTGCATTGCAGTTTCTTTTAATAGTAACTGAAatagatttccgcagatttttagctcatcacTGAGTCTattttttacttgagtaaatgtg

Function

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-335 Predicted to be involved in SCF-dependent proteasomal ubiquitin-dependent protein catabolic process. Predicted to be part of SCF ubiquitin ligase complex. Orthologous to human DMAC2 (distal membrane arm assembly component 2).

Ensembl:

ensembl_id ENSDART00000170011

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00018887 lncRNA upstream 614491 6159009 ~ 6160503 (+) True XLOC_008297
TCONS_00018886 lncRNA upstream 921652 5841557 ~ 5853342 (+) True XLOC_008291
TCONS_00018885 lncRNA upstream 1303486 5468360 ~ 5471508 (+) True XLOC_008289
TCONS_00018884 lncRNA upstream 1304143 5468098 ~ 5470851 (+) False XLOC_008289
TCONS_00018883 lncRNA upstream 1496091 5277903 ~ 5278903 (+) True XLOC_008279
TCONS_00018756 lncRNA downstream 684 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00018888 lncRNA downstream 82311 6867276 ~ 6875548 (+) True XLOC_008306
TCONS_00018757 lncRNA downstream 355445 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00018758 lncRNA downstream 949524 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00016691 lncRNA downstream 1020814 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00016678 mRNA upstream 108691 6652396 ~ 6666303 (+) False XLOC_008300
TCONS_00016679 mRNA upstream 108762 6661343 ~ 6666232 (+) True XLOC_008300
TCONS_00016676 mRNA upstream 281379 6459847 ~ 6493615 (+) True XLOC_008298
TCONS_00016675 mRNA upstream 293010 6459847 ~ 6481984 (+) False XLOC_008298
TCONS_00016673 mRNA upstream 656326 6114109 ~ 6118668 (+) False XLOC_008296
TCONS_00016684 mRNA downstream 1792 6786757 ~ 6807963 (+) True XLOC_008305
TCONS_00016685 mRNA downstream 269789 7054754 ~ 7057545 (+) False XLOC_008307
TCONS_00016686 mRNA downstream 272085 7057050 ~ 7058214 (+) True XLOC_008307
TCONS_00016687 mRNA downstream 279854 7064819 ~ 7161877 (+) False XLOC_008308
TCONS_00016688 mRNA downstream 301362 7086327 ~ 7161877 (+) False XLOC_008308
TCONS_00016681 other upstream 2874 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 47912 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016677 other upstream 215809 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016665 other upstream 919769 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016634 other upstream 3268571 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016699 other downstream 1897857 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016700 other downstream 1946787 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016703 other downstream 2254085 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016712 other downstream 2518844 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 3110893 9895858 ~ 9895986 (+) True XLOC_008335

Expression Profile

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