RNA id: TCONS_00016693


Basic Information

Item Value
RNA id TCONS_00016693
length 1119
RNA type mRNA
GC content 0.54
exon number 8
gene id XLOC_008313
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 7992906 ~ 8151485 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGTAGTCAGGCTCAGTTCCCCATCACCCAGAATGTGACGGTGGTTGAGGGCAGCACGGCAAACATGACCTGCCGAGTGGATTATAATGATAACACCTCCCTCCAGTGGTCAAATCCAGCACAACAGACCCTCTTCTTTGGGGACAAGAAAGCATTGAGGGACAACCGGATTGAACTGGTCCGAGCCTCGTGGAAGGAGCTGACCATCAGCATCAGTGACGTGGCTTTGTCAGATGAAGGACAGTACACATGCTCGCTCTTCACCATGCCTGTCAAGACTTCCAAGGCTTTCCTGACTGTGTTAGGTGTTCCAGCAAAGCCAGAAATCACGGGTCTCTCGAGACCTGCCCAGGAGGGAGAGGACGTCACACTGACATGCACCACATCTGGCAGCAAACCGGCTGCTGACATCCGATGGTTCAGGAACGACAAGGAGGTGCAAGCAGGTCAGAAGGAGGTAAACGCCACGGGCAGGTCATTCACGGTCAGGAGCAGCGTTCACCTGAAGGTGGACAGAAAGGATGATGGAGCTGCGTACACCTGTGTGGTGGAGCACGTCACGCTGGGCTCTTTACCGCACCAGGTCACAGAAGTGCTGGAGGTTCACTATCCTCCTCAGGTAAAGATTGTGCACTCAGTAATTGTACCTCAGGAAGGACAGTACTTCAAACTGGAGTGTATGTCCAAAGGCAACCCACTGCCTGAGCCAGTAATGTGGACAAAAGATGGAGGTGAGCTTCCAGACATAGAGCGAATGATCGTAGAGGGCAGAGATCTGATCATCACCACACTGAACAAAACAGACAACGGCACATATCGCTGTGAGGCCAGCAATCACCTCGGCACAAACAGAGATGAGTTTGTGCTCTATGTCTATGATCCCAACGCTCTGACGCAGCACGGCCCCGACCACGCGCTCATCGGCGGAGTGGTGGCCGTGGTGGTCTTCATCACCCTGTGCTTCATCATCGTCTTGGGCCGATATCTGGCCAGGCACAAAGGGACATACTTAACCAATGAGGCCAAAGGAGCGGAGGACGCCCCTGACGCAGACACTGCCATCATCAATGCGGAGGGGAACCACGCACATGCAGAGGAAAAGAAAGAGTACTTCATTTAG

Function

GO:

id name namespace
GO:0021782 glial cell development biological_process
GO:0060041 retina development in camera-type eye biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-080506-3 Acts upstream of or within glial cell development and retina development in camera-type eye. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in eye; immature eye; and nervous system. Human ortholog(s) of this gene implicated in autism spectrum disorder; malignant astrocytoma; obesity; psoriasis; and type 2 diabetes mellitus. Orthologous to human CADM2 (cell adhesion molecule 2).

Ensembl:

ensembl_id ENSDART00000193701

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016691 lncRNA upstream 237831 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018758 lncRNA upstream 306220 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00018757 lncRNA upstream 902869 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00018888 lncRNA upstream 1168203 6867276 ~ 6875548 (+) True XLOC_008306
TCONS_00018756 lncRNA upstream 1257696 6785649 ~ 6786055 (+) True XLOC_008304
TCONS_00018889 lncRNA downstream 611103 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00016701 lncRNA downstream 611209 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00016708 lncRNA downstream 1053893 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016715 lncRNA downstream 1262782 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016716 lncRNA downstream 1300607 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00016690 mRNA upstream 853568 7187228 ~ 7190183 (+) True XLOC_008310
TCONS_00016689 mRNA upstream 864886 7176182 ~ 7178865 (+) True XLOC_008309
TCONS_00016687 mRNA upstream 881874 7064819 ~ 7161877 (+) False XLOC_008308
TCONS_00016688 mRNA upstream 881874 7086327 ~ 7161877 (+) False XLOC_008308
TCONS_00016686 mRNA upstream 985537 7057050 ~ 7058214 (+) True XLOC_008307
TCONS_00016694 mRNA downstream 41344 8192715 ~ 8234946 (+) False XLOC_008314
TCONS_00016695 mRNA downstream 41349 8192720 ~ 8235529 (+) True XLOC_008314
TCONS_00016696 mRNA downstream 184229 8335600 ~ 8381511 (+) False XLOC_008315
TCONS_00016697 mRNA downstream 184229 8335600 ~ 8382997 (+) True XLOC_008315
TCONS_00016698 mRNA downstream 243448 8394819 ~ 8400091 (+) True XLOC_008316
TCONS_00016681 other upstream 1271631 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 1316669 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016677 other upstream 1484566 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016665 other upstream 2188526 5855111 ~ 5855225 (+) True XLOC_008292
TCONS_00016634 other upstream 4537328 3506309 ~ 3506423 (+) True XLOC_008259
TCONS_00016699 other downstream 531451 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016700 other downstream 580381 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016703 other downstream 887679 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016712 other downstream 1152438 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 1744487 9895858 ~ 9895986 (+) True XLOC_008335

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000308_01594565_01626825.mRNA True 870 mRNA 0.52 6 CI01000308 1594565 ~ 1626825 (+)