RNA id: TCONS_00016702


Basic Information

Item Value
RNA id TCONS_00016702
length 2805
RNA type mRNA
GC content 0.38
exon number 5
gene id XLOC_008320
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 8767650 ~ 8799977 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

cacaCCTTGCAGCAACGGCCCTCAGCTCGCATCCTGTCCGGAGAAGATAGCGGGCGGCTACAGATCTTAACCAAGGCAGAGGCGTCTGTATTTcctaattaaatcaattaaacatTCACCAGAATAAGTCCGACAACCGCGAACGACAAAAACTGAGCACAATGATCCGCTTTATCCTCATCCAGAATCGGGCTGGGAAGACCAGACTGGCCAAGTGGTACATGCAGTTTGATGACGATGAGAAGCAGAAGCTAATTGAAGAGGTGCATGCTGTAGTGACAGTCCGTGATGCCAAACACACCAACTTTGTTGAGTTCAGAAACTTCAAGATCATTTACAGGCGGTATGCTGGCCTGTACTTCTGCATCTGTGTGGATGTGACGGACAATAACCTGGCATACCTGGAAGCTATTCACAACTTCGTTGAGGTTCTCAATGAGTATTTCCACAATGTGTGCGAGTTAGATCTGGTCTTCAATTTCTACAAGGTGTATACGGTGGTGGACGAGATGTTTCTAGCAGGAGAGATCAGAGAAACCAGCCAGACGAAGGTGCTCAAGCAGCTCCTCATGCTGCAGTCCCTGGAGTAAACTGtcaatcagtcaaccaaccaatcaaacaacCACCATTGTGTCAGGCTCCGCCCACCCCGCTGCAGCCAAGCCATATGatttgtgtgtatgagtgttgtCATGCTGAAAATCATCCTCTAACATTTCACCTTTTTCTTTACACTCGCATCCACCTCACAGGATGTTGCCGTTCTGTCCTGCAACTTCATGAATTTTCGAGGCAGATAAGAATTCGTAAAACTTCCTCGGTTATGTGACCTGATTATATCTTGGCATAGCCAGAATTGAATTCTTCAGCGATTTTATAGCACACTAGACTTCAGTGTTTCCGACTGGAAGCCTCTCCAAGCCTGTTCATTAACACTAACATAGATAATAGCGTCATGTGGGCCAAAAAACTGCCATGGCACGAAAGTGACAGTCATAATTGCAAGATTCCGGGGCTGCACTGCAATATCGCAATGAGAAAAACTTGATTTGATGTCCATTTAAGGAAATTCCCATATATGTactattaaaaaaagaatcaaatgTTTAATATGCTGCACTGCAAATAATAAATTTGTTACtgctttgtcttgttttctgGTACAAGTATCCATATTGTTAAAACTCCAAATACGTAAAGGTGATCTTCCTGTTGGTGactatatctttttttatacaaTTAAGATGTTCATAATGGTGTCACAAAAAGGGTTTCGCAACAACTGTTGGCActtttgagagtaaaaaaaaaacatacaggcaaAACCAAATTAACTGACCGTTTCAGTATGGAGATGTCATTAATCCATGAACAGTTCCTGCTTGTCTTAACTATTTCTGAATTGTAAGAGGCGATTCGGTtgtaactaatgttaacatgGCTGCTAAAAAAAGTGTCAATATGGACCTTTCTGGATTCTAATAAGATTTGGAAATGAAGATATAAAACAGCAAATACATAAATaccattgttattatttacatccctcaaaatggtctaccCACTACTGATTCGGTGAGGTCCTAAGAAGTGAAATTAAAATTTATGTcaaacaaaatacattattttagatCCACAGCTTTGGCCAATTGTATTCTTTTTGTtttgcctattattattattttttttttttcactctaaAAAGTAATAATCGGGTTAATCAGCCTAATGGtgaatttaaagaaaaatgaaggagaaaacaaaatatttcctTGCCATACTCTTACTATGCatctgtttcttctgttgaacacaaaggaaggtaTACTGAAGTATGTTGGGAAAAaacatccattgacttccatagtcgaAACTAAAATATGTAAATCAATAGTTGTTTTTctcccccaacattcttcaaaatatcatcctttgtATTCAACAGTAACTTAAACGGGAACAAGTGGATGGTTAAAAGTGTTGTGAGGGTTAAAATTCCAAAATGTTACAacaaagtcaaataaaaatataaatttacagcAAGATTTTACTATAAAATCAAACatataaatgtttgtatttacgACAGACTCCCGTTGCTCGCATCAAAAGGATGGGGCGAATatgattaatgtatttttttcaacgACGacgtttatttttttggttaactATTACTTAAAATTTCCTTCTCAATGTATGTTTTGGTGTTAGTAtctggaaaacaagacaaaaacacagcAAGCCTGTTCGCAGTGTTAAGTCAAAGTCTGTGAAGGTTGTTTTGTATTGtgtacatatacattatatatgcATCTATTTGAAACGTAATTGTATGAACTAACTAGTCATTCCAAGCCTCTAAACCGGGTCAGTTTCTGCTCGTTGTAAGTCTTCTGGCTTTGTGGAGAACTGAAGCCGGCGATTAGCGAGCGCTTTAGAGAACCAGGCTGAGTGGAAGAATGAAGCTCGAGGGAAATGACAAAAGATGGTCTACTTTTAATTTCCCCTTTTGTGGCGCTGCTTCCCTCGCGCCAAAAGGCTCTATGGCAACAGCTCAGCCTTGAAAATTCCATTACACTTCGGGTCATACGTTACGATgagtttttgtctttattttgtacTTGTATGTTTTATATGGTCTTTCTTTTCGTCCCTTCAGCCTTAGTTTGAAATTTGGTAGGTCTACCTATTTGTCCCTGTGAAATTGCAGATTAAACGCTGATTTAAGTGGTGTTTCTCTTGCGTATGTTTCTGTCAGTGTATATATAACCATGAAGGTGAAATAAAACGTACAACTTCAAA

Function

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0015031 protein transport biological_process
GO:0046959 habituation biological_process
GO:0072583 clathrin-dependent endocytosis biological_process
GO:0030117 membrane coat cellular_component
GO:0030122 AP-2 adaptor complex cellular_component
GO:0016020 membrane cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0035615 clathrin adaptor activity molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04961 Endocrine and other factor-regulated calcium reabsorption
ko04721 Synaptic vesicle cycle
ko05016 Huntington disease
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-040426-2174 Predicted to enable clathrin adaptor activity. Acts upstream of or within habituation. Predicted to be located in membrane. Predicted to be part of AP-2 adaptor complex. Predicted to be active in intracellular membrane-bounded organelle. Human ortholog(s) of this gene implicated in familial hypocalciuric hypercalcemia 3. Orthologous to human AP2S1 (adaptor related protein complex 2 subunit sigma 1).

Ensembl:

ensembl_id ENSDART00000033871

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016701 lncRNA upstream 2621 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00018889 lncRNA upstream 3537 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00016691 lncRNA upstream 961730 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018758 lncRNA upstream 1030119 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00018757 lncRNA upstream 1626768 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00016708 lncRNA downstream 405287 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016715 lncRNA downstream 614176 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016716 lncRNA downstream 652001 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00018759 lncRNA downstream 840710 9640687 ~ 9649456 (+) False XLOC_008331
TCONS_00018890 lncRNA downstream 847641 9647618 ~ 9648249 (+) True XLOC_008331
TCONS_00016698 mRNA upstream 367559 8394819 ~ 8400091 (+) True XLOC_008316
TCONS_00016697 mRNA upstream 384653 8335600 ~ 8382997 (+) True XLOC_008315
TCONS_00016696 mRNA upstream 386139 8335600 ~ 8381511 (+) False XLOC_008315
TCONS_00016695 mRNA upstream 532121 8192720 ~ 8235529 (+) True XLOC_008314
TCONS_00016694 mRNA upstream 532704 8192715 ~ 8234946 (+) False XLOC_008314
TCONS_00016704 mRNA downstream 253082 9053059 ~ 9069172 (+) True XLOC_008322
TCONS_00016705 mRNA downstream 272844 9072821 ~ 9089507 (+) True XLOC_008323
TCONS_00016706 mRNA downstream 317353 9117330 ~ 9184449 (+) False XLOC_008324
TCONS_00016707 mRNA downstream 321077 9121054 ~ 9184057 (+) True XLOC_008324
TCONS_00016709 mRNA downstream 494643 9294620 ~ 9297563 (+) False XLOC_008326
TCONS_00016700 other upstream 35784 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016699 other upstream 84713 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016681 other upstream 1995530 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 2040568 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016677 other upstream 2208465 6559050 ~ 6559185 (+) True XLOC_008299
TCONS_00016703 other downstream 239073 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016712 other downstream 503832 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 1095881 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016731 other downstream 2765414 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016757 other downstream 4724897 13524874 ~ 13524988 (+) True XLOC_008360

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU412423 True 1648 lncRNA 0.42 5 CI01000154 981793 ~ 991232 (+)