RNA id: TCONS_00016707


Basic Information

Item Value
RNA id TCONS_00016707
length 1272
RNA type mRNA
GC content 0.51
exon number 2
gene id XLOC_008324
representative True

Chromosome Information

Item Value
chromosome id NC_007126.7
NCBI id CM002899.2
chromosome length 48040578
location 9117330 ~ 9184449 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGTTGGCCTATTCAATAAGCAACTCTGGGTGGGATGGTTATATAGACTTTAAAGAAATACTTTCTATTTTCACAGATTCTCAAAGATAAGGAACTGCAAGACTTCTACAATAGACAAAATCGCTGCTGTCTGATCCCTGCGCCTAGGCTCAGGTTTCAAAGGCAAGGCCTTCTCAATATGCTTTCCAACCAGTCATGCGAGAACATCACCAGCATCGAGGCAAATGGGAATCCGGGGACGAGCACTGTGATGTTCATTGCTGGAGTGGTCGGTAACCTAATTGCTCTGGCTATTCTGGGAGTCCATCAGAAAGATCGTCGCACCAAGTCTTCGGTCTTCTGCATCCTCGTCACAGGTCTGGCTCTGACAGACCTGCTGGGAACATGTTTACTCAGTCCACCAGTTTTCATCTGCTATGCCTACAGAACATCGCTGGTGGGACTGACTGGAGATCAGCGGCTCTGCGGACTCTTTGCCTTCGCCATGACCTTCTTCATCTTGGCCTCTATGCTCATCCTATGTGCTATGGCAGTAGAGCGATGTCTCGCCATCAGCCACCCGTATTTCTACTCCAAACATGTGAGGCGAAGCTTTGCTAAGATCGTCCTCTTACTCATCTATCTCTTTACCTTCGTGTTCTGCTTGATGCCTTTCTTCGGGTATGGCCGGCACAAGCAGTACTGTCCTGGGACATGGTGTTTCATCAAGATGGAAGTAGAAGAGGGTGATGATGAGGAGAGAAGATCATTGGCCTTCTCGCTGTCCTACGCCGTACTCATGGCATTGCTCAtcgccattgtgttcatgtgcaaCGGTTCGGTCATCGTGAGCTTGTGTCGGATGCACCGGAGCCAGCTGACACGCCGGGGATCAGTGGTGTCGGCTGGACGCAAGAGAAGGCTGAGCACCTGGTTTggacagggagaggaggagatgGACCATTTACTGCTGCTGGCATCCATGACCTTAATCTTCGTCATTTGCTCCTTGCCGCTGACTATCTGTGGCTTTGAGAATGCCATTAGTCCAGTTGGGAATGATCAGCGGAATCTAACGGCTTTCCGCTTCTCTGCGTTTAACCCCATCTTGGACCCTTGGATCTTCATCATCTTCCGTAAGGCGGTCTTCCACCACATCCGGGCTCTGTTCCGCTGCTGCTTCCCCAGAGAAGCAGTGAAGACCACAGCTCAAAGCTCCCAAGAGCTTAAGGCTGAAGACATTAAACACAGCTCCAGCATCCAGAGCAAGATCTACCACAGCCTCCCCCAGTGA

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007189 adenylate cyclase-activating G protein-coupled receptor signaling pathway biological_process
GO:0007204 positive regulation of cytosolic calcium ion concentration biological_process
GO:0006954 inflammatory response biological_process
GO:0048662 negative regulation of smooth muscle cell proliferation biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016501 prostacyclin receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04080 Neuroactive ligand-receptor interaction
ko04611 Platelet activation
ko04270 Vascular smooth muscle contraction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-120511-1 Enables prostacyclin receptor activity. Predicted to be involved in several processes, including adenylate cyclase-activating G protein-coupled receptor signaling pathway; negative regulation of smooth muscle cell proliferation; and positive regulation of cytosolic calcium ion concentration. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including eye; gill; heart; liver; and pleuroperitoneal region. Orthologous to human PTGIR (prostaglandin I2 receptor).

Ensembl:

ensembl_id ENSDART00000193889

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00016701 lncRNA upstream 356025 8762580 ~ 8765029 (+) True XLOC_008319
TCONS_00018889 lncRNA upstream 356941 8762474 ~ 8764113 (+) False XLOC_008319
TCONS_00016691 lncRNA upstream 1315134 7805779 ~ 7805920 (+) True XLOC_008312
TCONS_00018758 lncRNA upstream 1383523 7734489 ~ 7737531 (+) True XLOC_008311
TCONS_00018757 lncRNA upstream 1980172 7140410 ~ 7140882 (+) True XLOC_008308
TCONS_00016708 lncRNA downstream 21207 9205264 ~ 9211131 (+) True XLOC_008325
TCONS_00016715 lncRNA downstream 230096 9414153 ~ 9418151 (+) True XLOC_008329
TCONS_00016716 lncRNA downstream 267921 9451978 ~ 9457382 (+) True XLOC_008330
TCONS_00018759 lncRNA downstream 456630 9640687 ~ 9649456 (+) False XLOC_008331
TCONS_00018890 lncRNA downstream 463561 9647618 ~ 9648249 (+) True XLOC_008331
TCONS_00016705 mRNA upstream 31547 9072821 ~ 9089507 (+) True XLOC_008323
TCONS_00016704 mRNA upstream 51882 9053059 ~ 9069172 (+) True XLOC_008322
TCONS_00016702 mRNA upstream 321077 8767650 ~ 8799977 (+) True XLOC_008320
TCONS_00016698 mRNA upstream 720963 8394819 ~ 8400091 (+) True XLOC_008316
TCONS_00016697 mRNA upstream 738057 8335600 ~ 8382997 (+) True XLOC_008315
TCONS_00016709 mRNA downstream 110563 9294620 ~ 9297563 (+) False XLOC_008326
TCONS_00016710 mRNA downstream 110608 9294665 ~ 9304261 (+) False XLOC_008326
TCONS_00016711 mRNA downstream 113283 9297340 ~ 9315566 (+) False XLOC_008326
TCONS_00016713 mRNA downstream 143195 9327252 ~ 9353696 (+) True XLOC_008327
TCONS_00016714 mRNA downstream 203293 9387350 ~ 9387790 (+) True XLOC_008328
TCONS_00016703 other upstream 81890 9039050 ~ 9039164 (+) True XLOC_008321
TCONS_00016700 other upstream 389188 8731752 ~ 8731866 (+) True XLOC_008318
TCONS_00016699 other upstream 438117 8682822 ~ 8682937 (+) True XLOC_008317
TCONS_00016681 other upstream 2348934 6770586 ~ 6772120 (+) True XLOC_008302
TCONS_00016680 other upstream 2393972 6678521 ~ 6727082 (+) True XLOC_008301
TCONS_00016712 other downstream 119752 9303809 ~ 9311478 (+) True XLOC_008326
TCONS_00016719 other downstream 711801 9895858 ~ 9895986 (+) True XLOC_008335
TCONS_00016731 other downstream 2381334 11565391 ~ 11565509 (+) True XLOC_008343
TCONS_00016757 other downstream 4340817 13524874 ~ 13524988 (+) True XLOC_008360
TCONS_00016758 other downstream 4773665 13957722 ~ 13957850 (+) True XLOC_008361

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000154_00797516_00828865.mRNA True 1681 mRNA 0.49 6 CI01000154 797401 ~ 828865 (-)