RNA id: TU262185


Basic Information

Item Value
RNA id TU262185
length 260
lncRNA type inter_gene
GC content 0.34
exon number 1
gene id G231010
representative True

Chromosome Information

Item Value
chromosome id CI01000054
NCBI id null
chromosome length 13006764
location 3116175 ~ 3116434 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCATTTTTCCCATAGACTTTTGGAAAATCGCAAAAAATAAGCTCTGGGTTTAACAAAGGGTTATGACACTTACACGTTTTGTCTATCAAGATAATCTTTACAAGTTAACACAACATTTATACATTTTGAAGCCTAAATAAAGTCGTCAGATATAAAAAGCTAACAGTAGGCTATAAACAGACTACAGCACACCATGGTCGCGGATCAACGTCACCACCACCAAGCTTCCTCAAACTTTATTTAAAAAACAACTTTATT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU262179 lncRNA downstream 25905 3089984 ~ 3090270 (-) True G231004
TU262178 lncRNA downstream 59235 3056728 ~ 3056940 (-) True G231003
TU262077 lncRNA downstream 72331 2950781 ~ 3043844 (-) True G230910
TU262076 lncRNA downstream 133868 2950781 ~ 2982307 (-) False G230910
TU262074 lncRNA downstream 163534 2950781 ~ 2952641 (-) False G230910
TU262191 lncRNA upstream 22886 3139320 ~ 3139613 (-) True G231016
TU262279 lncRNA upstream 95622 3212056 ~ 3258021 (-) True G231096
TU262329 lncRNA upstream 191638 3308072 ~ 3308359 (-) True G231144
TU262336 lncRNA upstream 198981 3315415 ~ 3315625 (-) True G231151
TU262410 lncRNA upstream 251657 3368091 ~ 3368369 (-) True G231225
CI01000054_03082593_03087260.mRNA mRNA downstream 28630 3082348 ~ 3087545 (-) True CI01000054_03082593_03087260
CI01000054_03049995_03054032.mRNA mRNA downstream 62143 3049864 ~ 3054032 (-) True CI01000054_03049995_03054032
CI01000054_03032517_03047094.mRNA mRNA downstream 69081 3031826 ~ 3047094 (-) True CI01000054_03032517_03047094
CI01000054_03018229_03030984.mRNA mRNA downstream 85191 3018076 ~ 3030984 (-) True CI01000054_03018229_03030984
CI01000054_02999099_03015534.mRNA mRNA downstream 100641 2998780 ~ 3015534 (-) True CI01000054_02999099_03015534
CI01000054_03485424_03500327.mRNA mRNA upstream 368394 3484828 ~ 3500489 (-) True CI01000054_03485424_03500327
CI01000054_03918853_03925416.mRNA mRNA upstream 801964 3918398 ~ 3925416 (-) True CI01000054_03918853_03925416
CI01000054_03964701_03964965.mRNA mRNA upstream 848256 3964690 ~ 3964965 (-) True CI01000054_03964701_03964965
CI01000054_03998494_04025965.mRNA mRNA upstream 881984 3998418 ~ 4026082 (-) True CI01000054_03998494_04025965
CI01000054_04067809_04076131.mRNA mRNA upstream 951365 4067799 ~ 4076762 (-) True CI01000054_04067809_04076131
TU262068 other downstream 52832 3057648 ~ 3063343 (-) True G230908
TU262064 other downstream 255602 2854141 ~ 2859545 (-) False G230906
TU262065 other downstream 255602 2854141 ~ 2859545 (-) True G230906
TU262094 other downstream 278493 2837237 ~ 2837682 (-) True G230923
TU261213 other downstream 1886040 1226423 ~ 1230135 (-) False G230178
TU262888 other upstream 865413 3981847 ~ 3982823 (-) True G231645
TU263226 other upstream 1553717 4672197 ~ 4672233 (-) True G231958
TU263225 other upstream 1553838 4672197 ~ 4672233 (-) True G231958
TU263564 other upstream 2089765 5206199 ~ 5209240 (-) True G232274
TU265088 other upstream 3511648 6649149 ~ 6654013 (-) True G233619

Expression Profile