RNA id: CI01000058_00043409_00059894.mRNA


Basic Information

Item Value
RNA id CI01000058_00043409_00059894.mRNA
length 1632
RNA type mRNA
GC content 0.44
exon number 5
gene id CI01000058_00043409_00059894
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 43409 ~ 60422 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGCGTACCCGCCTCAATGTCCTGAAACCCTCACCTTCTGGTCATGAGCCTAAACAACTGCAGAAGCGTGTTTCATCACATCAGGATGTCATGAAATCTCGCTTTGACCACAAGCATCGAGTGCGCCATTTTTCTTTCCAAAAAGGGGATAAAGTGCGCATTAAAAAGTCAGTACATGTCCCAAAAGCCCATCCAAAATTCACTCCTCCAGTTGAGGTTAGGAAAAAAGTTGGCCCTTACACCTACCTCTTGGATGATGGAAAGAAGTGGCATGCATCGTGTCTTGCACCCGTGCCGACTAAAGCGCTGGATAATGGACTGACCATCAATGCTGAAAACTTGATTCCCTCTCATGTTCCATTGTCTGGAAATTCAGTGTCTTCTGATGCTTGTCCACGGGAGAGACGTCAAAGACGTGAGCCAGCACAATTTCAGCTTTGCACTCTGCAAGTTTTGGGGGTTATCAACATCATTTCTGGCTGCTGTCCCATGTTAGTTGCAACTTTTAACTCTATCCAATTATTTGCCATGCCTCTAAGGCGAGGGGCTGCTTATCGTGTGAATGATGCACGTATAGATGATGAAGGGCCATGCAGAGCCTGTGCCAACATGAGAACCCTAGCTGCAGTCTCTGCACTCGGCTCGCAGCTCTACCACGGGGAGGAGAGCATGATGAGCCGGGCTTATGAGGATAAGCTGTTCTTCTTTCTTTGCTGCCACTCGGTGTCGTGGGCGGAGGGGAATGCCGGCAGCCCTGTGATACTGGGTGGCCATAAGAGTGTTACTAAACTAATGTACGCTGTGCTAACATTAGAAGTTGTGGAGGCTATTGTGGCAATGCAGAGCAGTAAAGCTTCAGGACCTGATGGTTTCCCGATAGAGTTTTATAAGAAGTCTGCAGCTTTACTGGGCCCACTTCTTGTGGCAGTTTATAATGAGTCTTTTAATACTGGAACTCTTCCTTTAACACTTACGCAAGCCTCAATTTCTCTTATCCCAGAGAAAGGCAAGAATCCTCCTCATTGCAAATCATACAGGCCAATCTTGCTTCTGAATGTGGATTTAAAAATTTTATCCAAAATTCTTGTGTTCTCCCTACTATAATTTCAAACGACCAAACAGGATTTATTCGAGGCCGTAACCCCTTTAATAATTTACAACGCCTATACAATGTAATTTACACAAATTCTCCCCCAGGTGAACATGAAGCAGTAATATCTCTCGACACTGAAAAGGTGTTCGATAGAGTAGAGTGGGAATACCTTTTTAACACATTTAAACAGTTTGGTTTTCATGCAGACCTAATCTCGTGGTTTAGACTGTTATATACCTCCCCGGTTGCTTCTGTTTGCACAAACAACGTACAGTCTGAGTGTTTCCCCCTACACCGGGGCACCAGGCAAGGGTGCCCTCTCTCTCCCTTGTTATTCCCCATATCAACTGAACCCTTGGCTACTGCGCTCCATCAGTCTTCTAATTTTAAAGGTATTACACGGCATGGTACAGAGCATAAAATTTCCTTATATGCAGATGATGTTTTATTATATGTAAGAAGCTCAACCTCCTCAATACCTCAAATTATTTTACTATTAAAGGAGTTTGGCAAGTTTTCTGGCTATAAGCTTAACATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280489 lncRNA upstream 5054 38118 ~ 38355 (+) True CI01000058_00021632_00039608
TU280488 lncRNA upstream 5470 37640 ~ 37939 (+) True G247134
TU280487 lncRNA upstream 5823 37230 ~ 37586 (+) True G247133
TU280484 lncRNA upstream 7251 35958 ~ 36158 (+) True G247130
TU280483 lncRNA upstream 7649 35532 ~ 35760 (+) True G247129
TU280532 lncRNA downstream 1448 61870 ~ 62126 (+) True G247176
TU280553 lncRNA downstream 82333 142755 ~ 143591 (+) True G247192
TU280618 lncRNA downstream 167475 227897 ~ 228534 (+) True G247257
TU280679 lncRNA downstream 255557 315979 ~ 316343 (+) True G247300
TU280688 lncRNA downstream 271840 332262 ~ 332527 (+) True G247309
CI01000058_00021632_00039608.mRNA mRNA upstream 3439 21480 ~ 39970 (+) False CI01000058_00021632_00039608
CI01000058_00104333_00105839.mRNA mRNA downstream 43911 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00241253_00245763.mRNA mRNA downstream 180831 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00313907_00314170.mRNA mRNA downstream 253335 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00333202_00355871.mRNA mRNA downstream 272618 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00382692_00395743.mRNA mRNA downstream 322270 382692 ~ 395774 (+) True CI01000058_00382692_00395743
TU280659 other downstream 374620 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 531909 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 1168187 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1392575 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1735291 1795713 ~ 1795757 (+) True G247958

Expression Profile