RNA id: CI01000058_00104333_00105839.mRNA



Basic Information


Item Value
RNA id CI01000058_00104333_00105839.mRNA
length 1209
RNA type mRNA
GC content 0.41
exon number 2
gene id CI01000058_00104333_00105839
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 104333 ~ 106724 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCTAGATTGAAAATGATGTTCCTTTGGTGTCTTTTGGTTCTTGTAAACCTGGTCTCAGTGTCTACAAGCAACAATGCAGGCGTTGAAGTCAGACTAACTCAGAAGGCACTTGAGTATGCGTTCCCAACTATCTATGGCCTCACACATGAGGCACCACGTAGAAAGCGCCGCAGGAAGAGAGGAAGTCGTGGAGGCATTGCCGTCAAATTAAAGATGCTGTCGATATTAGATCGTAAGTCCACAGGATGGCTTTCATCACTCCCACAGGTCGGCGTTTATGACCGGTTTGTATCACGGCGTTTCTTGGAGGGGCCGTGCAGCTAGATTTAGCCGGTGGGATAGAGCTCTCTTGGGGTTCCACGAAGGTTCCCTTTGAACTACAACTGTTTCAAATCGCAGCTACAAACCCTATTACAGTTGCTTTAGTGTATAGGCCTCCGAAACCAAATAGAGCTTTTGTCGGGTATTATCATTTAGTTATGGCTAAATGATAATACCCGTGTCCTCAGAAGGCAATGCAGGCAAGCAGAGAGAAGATGGAAAAAGAGTAAATTACAAGTTCATTATGATATTCTTAGAGACTCCCTATTTAGTTACCAAAAGGCAGTAAGAAATGCAAAAAATACTTATTTTTCCAAAATTATTAGGGCAAATATTAATAATTCGAAACTCTTATTTTCTATTATTAATTCTGTAATTCAACCTTTGAGTAATGTGTATCAAAAGTCCTCAGTTATTTCCTGAGAGGACTTTCTAAATTTCTTTAGCCAAAAGATTGCTGATCAACGTGCGCGCAGATCCCTGTGGTGAAAACTGATCCATCTGACGATCCTGCTTGCAATGCTGAATTGAGGGTTTTTTAGCCTATTACTTCGACTATGCTGCAGGATATTGTGCAAAAAATGAAACCAACATTCTGTGCAAATGATTTTATACCCAGTCGTTTGTTAAAGCAGACCTTTCAATCGGGGTTCAAAGCAGCCCACAGCACTGAGACGGCATTATTGAAAGTGTTCAGTGATATCTTCCTGGCCTTAGACAAAGGAGATGATGTTGTTTTGGTGTTACTCGACCTGAGAGCAGCTTTTGACATGATCGACCATAACATCCTCATCTCCCTTCTTGAACATTCAGTAGGGCTAAAGGGTACAGTCCTGAAATGGTTTCAGTCCTATTTGAGCGACAGATGTTTTTCAGTTAACTATAATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280532 lncRNA upstream 42207 61870 ~ 62126 (+) True G247176
TU280520 lncRNA upstream 49695 54196 ~ 54638 (+) True G247165
TU280518 lncRNA upstream 51231 52884 ~ 53102 (+) True G247163
TU280517 lncRNA upstream 51655 52383 ~ 52678 (+) True G247162
TU280515 lncRNA upstream 52405 51547 ~ 51928 (+) True G247160
TU280553 lncRNA downstream 36031 142755 ~ 143591 (+) True G247192
TU280618 lncRNA downstream 121173 227897 ~ 228534 (+) True G247257
TU280679 lncRNA downstream 209255 315979 ~ 316343 (+) True G247300
TU280688 lncRNA downstream 225538 332262 ~ 332527 (+) True G247309
TU280693 lncRNA downstream 314406 421130 ~ 421530 (+) True G247314
CI01000058_00043409_00059894.mRNA mRNA upstream 43911 43409 ~ 60422 (+) True CI01000058_00043409_00059894
CI01000058_00021632_00039608.mRNA mRNA upstream 64363 21480 ~ 39970 (+) False CI01000058_00021632_00039608
CI01000058_00241253_00245763.mRNA mRNA downstream 134529 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00313907_00314170.mRNA mRNA downstream 207033 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00333202_00355871.mRNA mRNA downstream 226316 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00382692_00395743.mRNA mRNA downstream 275968 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00435196_00437830.mRNA mRNA downstream 328189 434913 ~ 438410 (+) False CI01000058_00435196_00437830
TU280659 other downstream 328318 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 485607 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 1121885 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1346273 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1688989 1795713 ~ 1795757 (+) True G247958

Expression Profile