RNA id: CI01000058_00313907_00314170.mRNA


Basic Information

Item Value
RNA id CI01000058_00313907_00314170.mRNA
length 914
RNA type mRNA
GC content 0.49
exon number 1
gene id CI01000058_00313907_00314170
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 313757 ~ 314670 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATTTATGCACCTGCTGCCTTTTGATGGTGAGAAGTACAGACTAAACAAAAACAAGGTAAGTGGATTTAAACACTTGAATGCCATCCTGCTGGTCATTTCACGGTGAGAAGAGCAGCAAGCAACATGACAAAGGGATTGACTTTTAGAAATGATTATGCAGCCTGACCCCTCCAGCGAGCTGCAGGATTTAGTGTCTTCTCCCTCTGACACCACAGACTCAGGAGAGTCAGATCCTGATTTTGTTGTGGCACCCTCATCATCCTCTACAGCTTCCACTGAAAGTGAGGAGGATTCAGAGGATCCTGGATCTGGGTGGATTGGGAGAAGCGGCGAAGTGTGGTTTTCCACCAACGTGGAGAAAACTCCCTTTCTTCAGCCTGCCAGAGGCGTGACTCCAGGACCGACACATTAAGGCAGGAACACACCAAGCCGACACCGACGAAATAGTGGCGACGAAAGCAGACTGCAGGGTTGGCTCACGTCGGCAGGGTCTGGGTCCAAAGTTGCCCTGACACACCAAACCGACGCTCAACAGCCGACGGCCAAGTAGCACGTCCGTTCTGCGCCTGCATAAGATGAAATGCCTTTCCGTACCAGCAGGTGGCAGTAGCTGATTCAACATGTCGAATCGGCCAAAAAAAAAAAAAAAAAAAAAAAAACGGATGAGGACCAACTTCAGCCAACAGTAAGGAACACATTGAGAAACCTTAGTCGGCCGAGGAACAAAAACTAACCGACGGCCGACTGTCGGCTTGGTGTGTTACTGCCTTTATGCCATCGCAAGGGTCCAGAATGTGGATTCTGTGTTCAATCTGTTTTTTACGGAGGAGATGATTGACCTCATTGTCAGCATGACTAACCTCCATAGGCGCCTCACAATGAGAAACTGGAGTTGTTGCACTTTGGTTCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280618 lncRNA upstream 85223 227897 ~ 228534 (+) True G247257
TU280553 lncRNA upstream 170166 142755 ~ 143591 (+) True G247192
TU280532 lncRNA upstream 251631 61870 ~ 62126 (+) True G247176
TU280520 lncRNA upstream 259119 54196 ~ 54638 (+) True G247165
TU280518 lncRNA upstream 260655 52884 ~ 53102 (+) True G247163
TU280679 lncRNA downstream 1309 315979 ~ 316343 (+) True G247300
TU280688 lncRNA downstream 17592 332262 ~ 332527 (+) True G247309
TU280693 lncRNA downstream 106460 421130 ~ 421530 (+) True G247314
TU280672 lncRNA downstream 111088 425758 ~ 426095 (+) True G247293
TU280695 lncRNA downstream 112577 427247 ~ 427462 (+) True G247316
CI01000058_00241253_00245763.mRNA mRNA upstream 67650 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00104333_00105839.mRNA mRNA upstream 207033 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00043409_00059894.mRNA mRNA upstream 253335 43409 ~ 60422 (+) True CI01000058_00043409_00059894
CI01000058_00021632_00039608.mRNA mRNA upstream 273787 21480 ~ 39970 (+) False CI01000058_00021632_00039608
CI01000058_00333202_00355871.mRNA mRNA downstream 18370 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00382692_00395743.mRNA mRNA downstream 68022 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00435196_00437830.mRNA mRNA downstream 120243 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00466891_00481927.mRNA mRNA downstream 151963 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 202480 517150 ~ 528807 (+) True CI01000058_00517452_00527181
TU280659 other downstream 120372 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 277661 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 913939 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1138327 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1481043 1795713 ~ 1795757 (+) True G247958

Expression Profile