RNA id: CI01000058_00333202_00355871.mRNA


Basic Information

Item Value
RNA id CI01000058_00333202_00355871.mRNA
length 2569
RNA type mRNA
GC content 0.45
exon number 19
gene id CI01000058_00333202_00355871
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 333040 ~ 355875 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TTATATAAACTAAAATAGTTTAATATAATCTCAGACTTCATAAGAATCATGTAAACTTTTTATTATTTCTTATAAATCTCAGTTTTCATAGATAACTAGCATTGTCGTTAGCTTTTAATAGTCTGACTTTGGTGGTTAACTAGCTGTCAAAACAATGTTATAATGACCAAATACAACCAGAAACAACTGTTCAGACTTGCATGTGAAAGTTTGCAAAACATTCGCAGTAAGATGGCGCTGTCTGGAGGGGCGGACAGAGGATCTCACAGCATGGATAAGAGCATAACACTCCCTCCGGATGAAATCTTCCGCAATTTGGAGAACGCCAAGAGGTTCGCTATAGATATAGGTGGCTCTTTGACAAAACTGGCCTATTACTCCACTGTTCAGCACAAAGTTGCCAAAGTAAGGTCATTCGATCATTCAGCGAAGGAAAAAGATGGCGACCCTCTTTATGAGATATCTGTTCAGGAAGAGATTACTGCCCGTCTTCACTTTATCAAGTTTGAGAATGCTTACATTGAAACCTGCCTGGATTTCATTAAGGACCACTTGGTTAACACAGAAACCAAAGTCATCAAAGCTACTGGTGGAGGGGCGTACAAGTTCAAGGACTTGATAGAGAAAAAGTTAAAGCTAAAAGTGGACAAAGAGGATGAAATGACTTGTCTGATTAAGGGATGCAACTTTGTTCTGAAGAATATCCCACATGAGGCTTTTGTGTATGCCAAACACGCTGATTCTGAATTCCGGTTCCAGAATACACACCCGGACATCTTCCCATACCTACTTATAAATATTGGCTCTGGAGTCTCAATAGTAAAGGTTGAATCAGAGGACAAATTTGAGCGTATTGGTGGCAGTTCTATAGGTGGTGGCACTTTTTGGGGTCTTGGAGCATTACTCACAAAAACTAAGAGGTTTGATGAACTTTTGCAGTTAGCTTCCAAAGGACAACACACAAATGTGGATATGCTTGTTAAAGACATCTATGGAGGTGCTTACGGGTCCCTGGGTTTAACTGGTGACCTCATTGCAAGTAGCTTTGGGAAATCAGCCACCACAGACAAAGAGTTCTCCAAAGAAGACATGGCAAAGAGTCTACTGCATATGATAAGCAATGACATTGGACAGCTGGCCTGCCTCTACGCCAAACTGCATAACCTTACCAGAGTCTATTTCGGAGGATTCTTCATTCGAGGACATCCTGTCACCATGCACACCATCACCTATAGCATCAACTTCTTCACTAAGGGGGAGGTCCAGGCTTTATTTCTAAGACATGAAGGATATCTTGGTGCTATTGGGGCCTTTTTAAAGGGGGCAGAAGAAGACAACCCTAACCAGTACAGCTGGGGTGAGAACTATGCTGGCAGCTCTGGTCTCATGAGTGTATCACCAGACTTAAATCCTGTGCAGCGGGCTCGTAGCGGAACGTTTGACATGTTGGAGATGGACCGCCTGGAGAGGCAGCTAGTGAACCTCCCCCTGCTGCAGGACCCAACCTCTTATATCCCAGACACAGTGGACTTGACTGAGGATGCTTTGGCTCGGGAGTACTGGCTCTTCTGCTTTGAGGAGGCATTGGATGGGGTGGTGAAGCGAGCTGTGGCTAGCCAGAAAGACCAACCAGAGGCTGTGGAGAGGGCAGAAAAGTTTCGTCAGAAATACCGTCACAAACTCCAGACTCTCCGGCACCAGCCTTTTGCTTATGGATCCCTCACCGTCAGAAGTCTTTTAGACACAAGAGAACACTGTTTAAACGAGTTCAACTTTCCTGACCCCTACTCTAAGGTTTACATTGAATCATCCTTCACCTTGCCTGTGATCAAGCAGAAAGAGAATGACATGGCCCTGAAATACTATCTAAAGGTGGTGAAGTCAGTAGAGGAGCTGAGCTGGGAGCAAAGACAGTTCACTTTGGTCAAAGGCCTCCTGGCCGGCAACGTTTTCGACTGGGGAGCCAAAGCAGTGTCAGAATTTCTATATACTGAACATTTTATATTCCCAGAGAGGCCATGGCTTGTGGATGCCTACAACCAATGGATTGAGAGAATGAAGGGTCCTCCTCATAAATGTGCATTGTTTTTCGTAGATAATAGTGGAATAGACATTATTCTCGGGGTTTTCCCTTTCATTAGAGAACTCCTCATCCGAGGCACAGAGGTTGTGCTTGCCAGTAACTCAGGCCCTGCCCTAAATGATGTCACTAACAGTGAGCTGCAGATCCTAACTGAGAGAATAGCTGCCATGGACCCTGTCATTCAGGCTGCACTCAAAGAGGACAGACTTGCTTTGGTGCAGAATGGTTCTAGTTCTCCTTGTTTAGACCTGAGTCGCCTGGACAAAGTCCTGGCCACAGTCGTCAGGGAGCGGGGCACAGATCTGGTTATCATTGAAGGTATGGGTCGGGCCATCCACACAAACTACTACGCCATGCTCAGCTGCGAAAGTCTTAAACTAGCCGTCATAAAGAACTCCTGGCTGGCCGAGCGTCTTGGAGGCAAGATCTTCAGTGTAGTCTTCAAGTACGAGGTCCCTTCTAAATCTCGAGAGCATCATTAGGGAA

Function

GO:

id name namespace
GO:0004594 pantothenate kinase activity molecular_function

KEGG:

id description
K09680 PANK1_2_3, CAB1, coaW; type II pantothenate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280688 lncRNA upstream 513 332262 ~ 332527 (+) True G247309
TU280679 lncRNA upstream 16697 315979 ~ 316343 (+) True G247300
TU280618 lncRNA upstream 104506 227897 ~ 228534 (+) True G247257
TU280553 lncRNA upstream 189449 142755 ~ 143591 (+) True G247192
TU280532 lncRNA upstream 270914 61870 ~ 62126 (+) True G247176
TU280693 lncRNA downstream 65255 421130 ~ 421530 (+) True G247314
TU280672 lncRNA downstream 69883 425758 ~ 426095 (+) True G247293
TU280695 lncRNA downstream 71372 427247 ~ 427462 (+) True G247316
TU280700 lncRNA downstream 72569 428444 ~ 433463 (+) True G247317
TU280658 lncRNA downstream 79167 458090 ~ 460789 (+) True G247284
CI01000058_00313907_00314170.mRNA mRNA upstream 18370 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00241253_00245763.mRNA mRNA upstream 86933 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00104333_00105839.mRNA mRNA upstream 226316 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00043409_00059894.mRNA mRNA upstream 272618 43409 ~ 60422 (+) True CI01000058_00043409_00059894
CI01000058_00021632_00039608.mRNA mRNA upstream 293070 21480 ~ 39970 (+) False CI01000058_00021632_00039608
CI01000058_00382692_00395743.mRNA mRNA downstream 26817 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00435196_00437830.mRNA mRNA downstream 79038 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00466891_00481927.mRNA mRNA downstream 110758 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 161275 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 173310 529185 ~ 544027 (+) True CI01000058_00529237_00544012
TU280659 other downstream 79167 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 236456 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 872734 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1097122 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1439838 1795713 ~ 1795757 (+) True G247958

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006588 False 1667 mRNA 0.44 11 NC_007122.7 15878366 ~ 15902440 (+)
bowfin (Amia calva) AMCG00002183 True 4116 mRNA 0.50 15 CM030136.1 6287217 ~ 6296247 (+)