RNA id: CI01000058_00382692_00395743.mRNA


Basic Information

Item Value
RNA id CI01000058_00382692_00395743.mRNA
length 900
RNA type mRNA
GC content 0.52
exon number 4
gene id CI01000058_00382692_00395743
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 382692 ~ 395774 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCTTAAATGCAGGGATAGATGCCTGCTGCTTGAGGCAATGTGAGCAGCTCTCAGGGACAAAAGACAGAGTGAAGGGGCCAGATTTACTGAGGGGAGCATCTGAGGATGAGAGGAGACCTAGGATGATCAAACAGGTGGCGCTGTATTTGAAGATGGCAGCTCCAGGCTTATGTTGTCTCTTTGCCCTGCTCCTTATCACACTGTCCCACACCTCGCACAGCTCTGAGATCCCATCTGAAAATGCCAAACGGAGTATGACCAGGTCTTCTACCTCCACCACTGACTCCAAGTCAGACCCTGACATGGGACTTCTGGGCGGCAACCAGCGAAGAAAACACTGGTCACGTAAAGACAGGGATAATGCTGGACTGCTCTCTCGAAGGCCTGTGGACCGACCGGAGGATGATGGGACAAGTCTAGAGGGCCTGAGCCCTGTAAGGCTGGAGATGGAGCCTGGGGACAGTATGAGGGTGGAGGTTCATGATGAAGTCAGGGGCCCTGCTCATATGCGGCGTGGAAATCATCCACCAGAGGGAGAGTTCAATCGTAAAGGCAGGAGACATGGCCACGGGCATCTGGCTGAGCACAGAAAACAGGGAGGCAAAAGAGACAAAGGCCGAGCTAAAGGGGATCTCTATGACCCTGAACCAGAATTAGGCTCCATGCTGAAGGACACGAATGCATTTGAGGATGTTCTTTACACCTCCCCACCCAATTACGACAATGCTCCACTCACTGAAGCTCCCTCCCACCTCTCCCCCATTTTGGTAACCACAGCAATCAACGAGCATCCCCCAACACTGCCCCCAGCCTCCACCAAACCCCAGATATCTTTTTACCACTCCCTGTATTTATTTAAATTCCCTTGAGAGGCATCACTAGGCCTGGGTACATATAATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280688 lncRNA upstream 50165 332262 ~ 332527 (+) True G247309
TU280679 lncRNA upstream 66349 315979 ~ 316343 (+) True G247300
TU280618 lncRNA upstream 154158 227897 ~ 228534 (+) True G247257
TU280553 lncRNA upstream 239101 142755 ~ 143591 (+) True G247192
TU280532 lncRNA upstream 320566 61870 ~ 62126 (+) True G247176
TU280693 lncRNA downstream 25356 421130 ~ 421530 (+) True G247314
TU280672 lncRNA downstream 29984 425758 ~ 426095 (+) True G247293
TU280695 lncRNA downstream 31473 427247 ~ 427462 (+) True G247316
TU280700 lncRNA downstream 32670 428444 ~ 433463 (+) True G247317
TU280658 lncRNA downstream 39268 458090 ~ 460789 (+) True G247284
CI01000058_00333202_00355871.mRNA mRNA upstream 26817 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 68022 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00241253_00245763.mRNA mRNA upstream 136585 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00104333_00105839.mRNA mRNA upstream 275968 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00043409_00059894.mRNA mRNA upstream 322270 43409 ~ 60422 (+) True CI01000058_00043409_00059894
CI01000058_00435196_00437830.mRNA mRNA downstream 39139 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00466891_00481927.mRNA mRNA downstream 70859 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 121376 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 133411 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 152053 547827 ~ 567172 (+) True CI01000058_00548398_00567030
TU280659 other downstream 39268 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 196557 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 832835 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1057223 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1399939 1795713 ~ 1795757 (+) True G247958

Expression Profile