RNA id: CI01000058_00435196_00437830.mRNA


Basic Information

Item Value
RNA id CI01000058_00435196_00437830.mRNA
length 1274
RNA type mRNA
GC content 0.43
exon number 4
gene id CI01000058_00435196_00437830
representative False

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 434913 ~ 455744 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTATAAATGCACTGTATAAATGAAAGCAATTATTTACAGTGACATCAATACATACACATACAAACACAGGTTCTCTAGTTCTGCACTCATATGGAGTAATGAGCAGAAGTGGGAGGTGTAGTCACACGGCTCTGATCAGGCTGGTGTCACATGGTTTGTGTTTGCAGTCACTTCAAAGCGCTGGACTAACTTCTGTTACACAGTTATGATGAAAGTGTTTCATGCTTCCTTTGTGAAATACTGAAAACTACAGAAGAAACATTTAATCGCAAAGAGTGAAACAATGGAAATACCAGCCATAAATCTCAAGGCCATCGTGTTGGTTCATTGGATACTGACAGTCTGGGCATGCTTGTATCCCTGGCTTCCTACGTCTTATGTGTTAGGGAACGGTAGTGTTCTTGCAGTGGGAGTGTGGGCCATAGCACAGAGAGACTCCATAGATGCTGTATTATTGTTTTTGATCGGGTTGGCAGCGACCATCTTGACTGACATTGTTCATTTTGGTCTGTGCTATGTGACGCCTGCAAACCTGCCGGATTTGTTCCGATTTAGTGCAGGCATGGCCATCCTGAGCCTGGTGCTCAAACCTGTTTCCTGTTTCTTTGTCTACCAGATGTACCGTGAGCGGGGTGGCGAATACAACATCAACTTTGGTAAGTTGGTGACTAAAGGCCCAAAGGATAAAGAGTAATGGGTGACTGATTAATTTTGGTCCAGAGTGCTTTGTGGTGCATGTGAAAGTATTTCCATGAAGTTAAAATGTCAGCATTGTTTGCTCTGGTTTGTTTAAAGCATTATTGAGCCTGTTTTAAGCATTCTGTGTGTCTGTGGACACTGACTGTGGAGCACAAGCAGAGTATTTCACTGAAAATGGCAAAATGAGTAAAAAGAGGTGTGGGTAATTGAGTTTTACAGCTAGTCACAAGACACATGCCTGACAGAGTGGCCCACAGAAAAGAAAAGAGACAGACAGCTTGACTGGTCTTTGAAGAACAGTGCGTGGGCCTAAAGGGATTAGGCCAGTTTTGACTGATTCCTCACTGTAAGATCTTTATGAACCTTGGGGCACATTCAAGCTCAAACCAGTGCGCAACGTTTTCCTACGGTTTCCGGGTTGAACGACATGTTTCCTGGAAACGGTGTGCAACGGGTTTGAGATACGTTTTCTCTTGTTTGGTGGGTGTGTCAAAAATGTCAGCCCAATCAGCATCAACATGCATATAAACCACGCAGTATTAAAGAAACAGCTCGTAAATGTAATTAACATCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280700 lncRNA upstream 1450 428444 ~ 433463 (+) True G247317
TU280695 lncRNA upstream 7451 427247 ~ 427462 (+) True G247316
TU280672 lncRNA upstream 8818 425758 ~ 426095 (+) True G247293
TU280693 lncRNA upstream 13383 421130 ~ 421530 (+) True G247314
TU280688 lncRNA upstream 102386 332262 ~ 332527 (+) True G247309
TU280706 lncRNA downstream 25329 463739 ~ 463981 (+) True G247323
TU280726 lncRNA downstream 50756 489166 ~ 489403 (+) True G247342
TU280721 lncRNA downstream 67898 506308 ~ 507353 (+) True G247337
TU280996 lncRNA downstream 244816 683226 ~ 683442 (+) True G247563
TU281012 lncRNA downstream 278100 716510 ~ 716777 (+) True G247578
CI01000058_00382692_00395743.mRNA mRNA upstream 39139 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 79038 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 120243 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00241253_00245763.mRNA mRNA upstream 188806 241253 ~ 246107 (+) True CI01000058_00241253_00245763
CI01000058_00104333_00105839.mRNA mRNA upstream 328189 104333 ~ 106724 (+) True CI01000058_00104333_00105839
CI01000058_00466891_00481927.mRNA mRNA downstream 28223 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00517452_00527181.mRNA mRNA downstream 78740 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00529237_00544012.mRNA mRNA downstream 90775 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 109417 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00592498_00596709.mRNA mRNA downstream 154054 592464 ~ 596813 (+) False CI01000058_00592498_00596709
TU280966 other downstream 153921 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 790199 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 1014587 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1357303 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 4255998 4694408 ~ 4696910 (+) False G250039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006596 False 859 mRNA 0.40 5 NC_007122.7 16040517 ~ 16062913 (+)