RNA id: CI01000058_00517452_00527181.mRNA


Basic Information

Item Value
RNA id CI01000058_00517452_00527181.mRNA
length 2816
RNA type mRNA
GC content 0.42
exon number 6
gene id CI01000058_00517452_00527181
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 517150 ~ 528807 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATAAAACGAGGTGATGACCATGCAAATTTGAAACCATTACAATATTTATTTATTTAGCTAGTTTTACGATCGAACAGGTTTAATTGATCATCGTTAGGCGAGCGAATGTCGCGGTCATCCAGTAAGTGGCAGTAGCCTACCACCTCAGCGTGAACAGCGTCCGTGTGTGTTGATTTCACCTCAATAGTGCGCCTGAGCTTGTGCTGTGTATTAATAGGCATCTGCATGTGAGTGGAGCCTTTCACTCGTGCATACGGCGAGTCTCTTGAAGATCTGTTCATGTGGTAGGGTCAGAACATCATGGACGTGCTAGATGTCCTTAATCTGGGCGAATTTGCCCAGTATTTCTCGAAAATGGCGATGTTTCCAGTTTTTGATCTCGCTTATTATATCGTGTCAATACTCTACCTCAAATACGAACCAGGTGCTGTGGAAGTGTCCCGTAGAAGCCCAGTGGCCTCATGGCTCTGTGCGATGCTCTACTGCTTTGGGAGCTACATACTAGCAGATATCATGCTTGGTGTGTCTCCCATCGACTATTTCCACAACAACAGTCACATCCTCCTGGCCTCAGCTGTGTGGTATTTGATTTTCTTCTGCCCTCTTAACCTGTTTTACAAATGTGTGGCATTTCTGCCTGTGAAACTCGTGCTAGTGGCCTTGAAAGAAGTGGTCCGGACCCGTAAGATCGCTGCTGGAGTCCATCATGCTCATCATGCGTATCACCATGGCTGGCTGATCATGGTCATTACTGGTTATGTCAAGGGGTCTGGGGTCGCTCTAATGTCCAATTTCGAGCAGCTGTTGCGAGGAGTCTGGAAGCCAGAGACCAATGAAGTTCTCAACATGTCATTCCCTACCAAGGCCAGTCTGTATGGAGCCATTCTGTTCACACTTCAGGAGGCTCACTTGCTCCCTGTGTCAAAGAGCACGCTCATCTGTCTCTTCACACTCTTCATGGCCACATCCAAGGTGTTTATGACGGCCCAACACTCTCACGGATCGCCGTTTGCCCTCATTGAGTCCTGGGTGTGCCACTTGCTATTCGGCTCCCCCCTTGGTATTGAAGATGCCCATGATCACCATCACTCCGCACCAGCCGCTGCTGCTGCTCCGCTGTCTCCCGCCAAAACCAAGGAGGAACTGAGTGAAGGAACCCGCAAGAGGAAGTCGAAGAAAGCCGAGTAGAGTTACAACACAAAATCATCAACCCAACCTGTGATATGACAGAGCTGCCCGGCTCTGCTTGAGAAAGGAGGGAATATGATGTTAAACCAATGCAAGTTTCTCTTTCAATGGTGCTTTTAATGACAGACATGCCACATAGGGACTCTGTAAATAGCTTCCCCCTCTTTGCCAACATCCTTGTCTTTATTTATTTTTCGTAATGTTTTCCATCATTGAAGTCCCATTTACACTATGCATCTGATGATGTGCAGTATGTCAAGAACAGATGAATGAATGAAAGGCAGTGAGATGAGTTGTTTGAGTTCAGACTTCACTGAAGGGTCTGTCCAAATAACTTGATGAGACTCGTAGTCCACCGTTGGTTGACCCCATTTCCACAGCACACTGCTGCTTTTTACATCTAGTGGCACTGAAAAAAATATATTTTATCAAGAAATAAATTAAAATAAATTGTTTTTCAGCCAAAAGCACACATTGTTTCAAATTCTTCCAGATGTTTCTGCTGCTGCATTTTAAATATTTTTGGGTTCACATGACTTAAAGTCCCCCTGTAGTCAATAATTTTATCCATTATAACTCATCTTTAATTACCAAAATGACATATTTAAACGTTTTTTCCTGTGAGAAAAAAATTCTTCATGCCTTAAAATAGTTTGAATGTAACTCTACACCCTTGCTTCATTTAGTATATGCGGACTCATGAATATGCAAATTAGCCCTGCCTCCACTCACTCACACCAGCTCAGATTACCTGATCCACTCAACTTTACTGTAGTAAACGCTGAAAACTGGCAAGGAATGGCAATGGAAATACTGGTTTAATTCAGCCATATATGTTTGAACCAGAAACTAATTTAGAAGAAATGGAAGAGTAAATTATACAGGGTCATCTACAAAGTCGATGTATCAGAATGGTGATGCATTTTATGTATATCTACACTGTCGGACACATAACGGTAATTATTATATGATTATATATTATATGATTAGTCTTTTGCTTGACTACGTTATCAAACAGCTAATAATGTGTTACTAATGTTATGCAAACCATTGCCATCTCAGAGTCAGACAGCTGCCTTTTAAAAATCAGTATCCTTAGAAACGCTTTGAACAACTTAGAACATCAGTGGAGATATAGTTCATCATAACATCGTAATATAATATACATAATTCACCCCCTATATTGCCAAATGTATACGAAAAAATATTCTGGGACAACCTGGTCTCCAACGGTTGGAGTTAAAAATCATCATTTGTGTTCTACTGAAGAAACAAAGTCGCCTACATCTTGGATGCCCTGGGGGTAAGCAGATAAACATCAAATTTACATTTTTGGGTGAACTATCCCTTTAATGATATGCTAAAACCTGCCGGCACATTGACGTGATTGGTTACAAGGTAGTTTGTGACGTAAGATACACCAGCGATTTCAAACCGAGCAATGGTGCTGACTTATGAATTTGCACATGGTTTGTCTTAAAGCATATTAAAAACACCACATAGACATATAAACATTAGGGGACTTTAAATCCATGGTTAAATCGCACTGTGAAGTGGTCAAATAACTGCCTTGACGTCATTGCAAGCCAATTGCATGACAAATGAGAGTTTTGAGGATACAGACAA

Function

GO:

id name namespace
GO:0005267 potassium channel activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280721 lncRNA upstream 9797 506308 ~ 507353 (+) True G247337
TU280726 lncRNA upstream 27747 489166 ~ 489403 (+) True G247342
TU280706 lncRNA upstream 53169 463739 ~ 463981 (+) True G247323
TU280658 lncRNA upstream 56361 458090 ~ 460789 (+) True G247284
TU280700 lncRNA upstream 83687 428444 ~ 433463 (+) True G247317
TU280996 lncRNA downstream 154419 683226 ~ 683442 (+) True G247563
TU281012 lncRNA downstream 187703 716510 ~ 716777 (+) True G247578
TU281055 lncRNA downstream 198632 727439 ~ 727828 (+) True G247617
TU281094 lncRNA downstream 212041 740848 ~ 754686 (+) False G247641
TU281096 lncRNA downstream 212041 740848 ~ 754686 (+) False G247641
CI01000058_00466891_00481927.mRNA mRNA upstream 35133 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00435196_00437830.mRNA mRNA upstream 78740 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00382692_00395743.mRNA mRNA upstream 121376 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 161275 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00313907_00314170.mRNA mRNA upstream 202480 313757 ~ 314670 (+) True CI01000058_00313907_00314170
CI01000058_00529237_00544012.mRNA mRNA downstream 378 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00548398_00567030.mRNA mRNA downstream 19020 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00592498_00596709.mRNA mRNA downstream 63657 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_00652594_00653181.mRNA mRNA downstream 123528 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00728698_00738214.mRNA mRNA downstream 199713 728520 ~ 738938 (+) True CI01000058_00728698_00738214
TU280659 other upstream 61406 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 63524 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 699802 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 924190 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1266906 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 4165601 4694408 ~ 4696910 (+) False G250039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006344 True 1395 mRNA 0.47 6 NC_007122.7 7158723 ~ 7179516 (+)