RNA id: CI01000058_00529237_00544012.mRNA


Basic Information

Item Value
RNA id CI01000058_00529237_00544012.mRNA
length 1882
RNA type mRNA
GC content 0.49
exon number 11
gene id CI01000058_00529237_00544012
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 529185 ~ 544027 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTAAATAGATTTGTGTGTAGGTGGAAAATCACTGAAAAAAAAATTCCAAAATGCCTGAAATTACAGTTATCACATATGACTTGATAATCAGTGAAGTTGTGTTTGGCTCTGGGGATCGGGTCTGTGATGACAACCGTTTGCGCTGGGACCTCACTCCTGACCAGATCCACCAGCTTACCGAAGAGCTTATTGCCAAGACCAAAAAGGTGTATGACACTGTCGGTGCCCTGGACTTGGCCAGTGTCAGCTATGAGAACACCCTGAAGGCCCTGGCTGATGTGGAAGTAGAGTACACAGTTCAGAGGAACATGTTGGATTTCCCTCAGCATGTGTCCCCCTGTAAGGACGTCCGCACGGCCAGCACCGAAGCCGATAAGAAGCTGTCAGAGTTTGATGTGGAGATGAGTATGAGGGAGGATGTTTATCAGAGAATCGTGGCTCTGGAGGAGAAGCTGTCAGATGAGAGTTTGACACCCGAGGCCAAGCGATATATGGAAAGACTCATAAAGCTTGGGAAGAGAAATGGCCTTCATCTTTCCAAAGAGATGCAGGAGGAGATCAAAAAGATCAAGAAAAAAATGAGCACTCTGTGTATCGATTTCAACAAACACCTGAATGAAGATACAACTTGCCTGTATTTCTCTCGAGAGGAGCTTGGTGGGCTTCCTGAAGATTTCCTCAACTCTCTGGAAAAGGATGAGTCTGGAAAACTAAAGCTCACTCTGAAGTATCCTCATTATTTCCCCACCATGAAGAAATGCTTTGTCCCAGAGACACGGAAGAAGTTAGAGGAGGCTTTCAACTCACGCTGCAAAGAGGAGAACTCTGCTATTCTGAAGGAGCTTGTAGAGTTGCGCTCTAAGAAAAGCAGCCTGCTGGGCTTCAGCACTCATGCTGACTTTGTGCTTGAGATGAACATGGCCAAGGCCTCCAAGAAGGTTGCAACTTTCCTCGAGGATCTGGCCCATAAACTAAAGCCCCTGGGTGAGGAGGAGAGGGCTGTTATTCTGAAGCTGAAGGAGCAGGAGAGCCAGAAGAGAAATTTGCCCTTCACTGGAGAACTCCATGCCTGGGACACACGCTACTACATGACCCAGGTGGAGGAGACCCAGTATGCTGTGGATCAGAACCAGCTAAAGGAATATTTCCCAATGGAGGTGGTTACCAAGGGTCTTCTGGACATCTATCAGGAGCTGCTTAATCTCACCTTTCAGCAGGTGGAGGGAGCACCTGTCTGGCATGATGATGTGACGCTGTACTGTGTTAAAGACCGCTCTTCCGGCCAGGTGGTGGGCCAGTTTTATCTGGATCTTTTCCCCAGGGAGGGTAAGTATGGCCATGCTGCATGCTTTGGCCTGCAGCCCGGCTGTTTGCTCCCGGACGGAACCAGGCAAATGTCTGTGGCTGCCATGGTGGCTAATTTCAGCAAGCCCACCGCTGACGCGCCATCCCTGCTGCAGCACGACGAAGTGGAAACGTACTTTCATGAGTTTGGACATGTGATGCACCAGCTTTGTGCTCAGGCTGACTTTGCAATGTTCAGTGGGACTCATGTTGAGAGGGATTTCGTGGAAGCTCCGTCTCAGATGTTGGAGAACTGGGTCTGGGAGAAGGAGCCACTGCAGCGCATGTCCAAGCACTACAAAACAGGAAACCCCATTCCAGAGGAGCTTCTGGACAAACTCATCAAATCCAGACTTGCTAACACAGGGTTGTTTAACTTGAGGCAGATTGTTCTGGCTAAGGTGGACCAGGCTTTGCACACAAAGAATGGGGTTGACCCGGCTGAGGAGTATGCCAAACTCTGCTTGGACATTCTGGGAATTCCTGCTTCACCAGGTATTTGGGTCTCAGTAATAAAATAAAAATATTTTCACAAA

Function

GO:

id name namespace
GO:0016787 hydrolase activity molecular_function

KEGG:

id description
K01392 THOP1; thimet oligopeptidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU280721 lncRNA upstream 21832 506308 ~ 507353 (+) True G247337
TU280726 lncRNA upstream 39782 489166 ~ 489403 (+) True G247342
TU280706 lncRNA upstream 65204 463739 ~ 463981 (+) True G247323
TU280658 lncRNA upstream 68396 458090 ~ 460789 (+) True G247284
TU280700 lncRNA upstream 95722 428444 ~ 433463 (+) True G247317
TU280996 lncRNA downstream 139199 683226 ~ 683442 (+) True G247563
TU281012 lncRNA downstream 172483 716510 ~ 716777 (+) True G247578
TU281055 lncRNA downstream 183412 727439 ~ 727828 (+) True G247617
TU281094 lncRNA downstream 196821 740848 ~ 754686 (+) False G247641
TU281096 lncRNA downstream 196821 740848 ~ 754686 (+) False G247641
CI01000058_00517452_00527181.mRNA mRNA upstream 378 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00466891_00481927.mRNA mRNA upstream 47168 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00435196_00437830.mRNA mRNA upstream 90775 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00382692_00395743.mRNA mRNA upstream 133411 382692 ~ 395774 (+) True CI01000058_00382692_00395743
CI01000058_00333202_00355871.mRNA mRNA upstream 173310 333040 ~ 355875 (+) True CI01000058_00333202_00355871
CI01000058_00548398_00567030.mRNA mRNA downstream 3800 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00592498_00596709.mRNA mRNA downstream 48437 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_00652594_00653181.mRNA mRNA downstream 108308 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00728698_00738214.mRNA mRNA downstream 184493 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00847992_00862210.mRNA mRNA downstream 303270 847297 ~ 862430 (+) True CI01000058_00847992_00862210
TU280659 other upstream 73441 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU280966 other downstream 48304 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU281473 other downstream 684582 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 908970 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1251686 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 4150381 4694408 ~ 4696910 (+) False G250039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006348 True 2124 mRNA 0.50 14 NC_007122.7 7183131 ~ 7211899 (+)