RNA id: TU280966



Basic Information


Item Value
RNA id TU280966
length 956
RNA type TUCP
GC content 0.38
exon number 2
gene id CI01000058_00592498_00596709
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 592331 ~ 597171 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCACTGAGTGCCATAGTAAACACTTTACGTGTGTAATATGTTGTTCAGTCATTTACTAGAAGGTTTTGTTTCACAGTGTACAGATTCCCCATTAACATAAACACTAATGCTTTATAAAACGCATATCCTTGTTGTTTAAAACTAGAGCTGGTACGTTAACAATCAGGATGAATTTTAGTTCCAAAGGCAAGAAGCGGATGGTTCTTCCGACCCGACCCGATCCGCCGACAGTAGAACAGATCATGGAGGATGTGAACCGAGCCTATCCCAATGATCCAGTTTTCACTGTTTTACACGAATCTGCTGAAGATTTGAAGTCCAGTTCCAGCAACAGTGAAGTGGAGGTAAGATACCTGCAGAGCAGACGCTACATAAAGCTGCATGAGCGATTGCAAGAGGAACGTGGCAATCTTGCTCGGCGGAGAGACGAGCTGCGTGCAGCTGGGGAGTCTTTGGAACACAGTGTGACGGAGGTGAAGAGGAGTGCAATGTGACAACTCGCAGGGGCCTGCAGAACATTCACGCCCGCATCTTATGAACTTAAGATTTGCTTATTCAATAGTTGATTGTCGAGCATGGCACTTGTGAATATAACAAATTAAAATTAAATTCAGTAGAATACCGAGTGTTTTTCCTGTTGGATGTTTGATGCATTTATTTAATGATTTGTTTGTGATATTTTTGGCTGATTTTTTTTTTTTTGGTCAATGTTAATGTGTGTTATGTGTGTTTAAAAGAAGTACACAGTCCATTCAACAAGTTGTGCAGTCTTTAATGTATTTTATATTATTTAATGTCATTTATATCTAAATTTTCACAATACAAGATTCCTTGAGTTTATGATGAATGGAATTTTTCAGTGTTTACAGACAGTACAACTTGTTGAATATATTGATGATTGTACAGCTATTCTTCACTGGTTAATTTTCATTTGCATTAAATAATTTGTGTTAAAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU280721 lncRNA upstream 84978 506308 ~ 507353 (+) True G247337
TU280726 lncRNA upstream 102928 489166 ~ 489403 (+) True G247342
TU280706 lncRNA upstream 128350 463739 ~ 463981 (+) True G247323
TU280658 lncRNA upstream 131542 458090 ~ 460789 (+) True G247284
TU280700 lncRNA upstream 158868 428444 ~ 433463 (+) True G247317
TU280996 lncRNA downstream 86055 683226 ~ 683442 (+) True G247563
TU281012 lncRNA downstream 119339 716510 ~ 716777 (+) True G247578
TU281055 lncRNA downstream 130268 727439 ~ 727828 (+) True G247617
TU281094 lncRNA downstream 143677 740848 ~ 754686 (+) False G247641
TU281096 lncRNA downstream 143677 740848 ~ 754686 (+) False G247641
CI01000058_00548398_00567030.mRNA mRNA upstream 25159 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00529237_00544012.mRNA mRNA upstream 48304 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00517452_00527181.mRNA mRNA upstream 63524 517150 ~ 528807 (+) True CI01000058_00517452_00527181
CI01000058_00466891_00481927.mRNA mRNA upstream 110314 466633 ~ 482017 (+) True CI01000058_00466891_00481927
CI01000058_00435196_00437830.mRNA mRNA upstream 153921 434913 ~ 438410 (+) False CI01000058_00435196_00437830
CI01000058_00652594_00653181.mRNA mRNA downstream 55164 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00728698_00738214.mRNA mRNA downstream 131349 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00847992_00862210.mRNA mRNA downstream 250126 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00870909_00930600.mRNA mRNA downstream 273738 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_01239590_01240099.mRNA mRNA downstream 642331 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
TU280659 other upstream 136587 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281473 other downstream 631438 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 855826 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 1198542 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 4097237 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 4097291 4694462 ~ 4696910 (+) False G250039

Expression Profile