RNA id: CI01000058_00847992_00862210.mRNA



Basic Information


Item Value
RNA id CI01000058_00847992_00862210.mRNA
length 1107
RNA type mRNA
GC content 0.44
exon number 2
gene id CI01000058_00847992_00862210
representative True

Chromosome Information


Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 847297 ~ 862430 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GTATTAAAGGGTGGTGAGATATATTTAGTGTATCTTCAAGAAACCTAGGGGGGTGCACACACTGTTTTTAATGGGCTCCTAAGTGGCTCGTTACTGGAGTGACGATGTTTCCCATGAGGCCATGAGTGTGTTTTATGGGAGGCCGGTGGAGGGTGTAAACATGCAGAGAAGGAAAACATTTAAAATATGAGATACTGTATGTGATAGTGTTCTCTTTGGCTGGAGAATATGCACCGGTGGCTTTAGTGGACGAGAAACCTGCCTCCTCACAGACAAGGATGGTAGTGGAACAGGTTTTGGAGAAGAGAGTCAGATAAACTGTAACGACAGGCTTTGAGGTAAATGGCTTGTTTGTAATGCGGGAGGTGCTGTTTCAGGTCTCAATCACCTTCCAGTAGAGGGTTTCTACACCTGGGAGGAAATCTGTGTGAATTTGCTACTGGAAAAAAACAAAAAACAAACAAAAAAAATCCATGGAGAAACTGAGGCGAGTGAGACTGGAGCAGTTTAAAGGAGGAAGTTTTTATGCCTGAGGAGCTCTTCATCGACAGCCAAACACTGACAGTCCACTGTGGTTTTCTTGCAGGCTCGGAGGTCAATGATGGTTATCTCTCAGAGTGACTTCCCTGGATCGTTGTGACTACAGTGATTTCGACCCAGACATGTGGAAAGCGGCAAGTACAGTCAGAGCCAGGATGGGATGTTCAGAATGGAAGTCTTTGGTCCTCTGTGGCCTAGTGTTCGTCTTGACGGTCGTACAGAGTTCTGACGCATGTACCTATATCAAAGAACCTCCTGATAGCCTGCCTGCTGTTGCCATGGAAGAGAAGGATGCAGATGAATTGGGGCAAATGGTGGTGTTGAATACCAATGAGCCCAGGAGCTGATAGCTCACAAACATGTTTAACGCTTTTTTGCTAAACTACTGACACTGCAAGTTCTTTTTCTTTTCTTTTTTCTTTTTTTTTTTTTTTTGTATTGTGTTTTTAATGGCCCAATAATGTGTCAGGACAGCGGAAGTGGTCAGTAAGAGTGGCCGTCTCACTGAAACTCAATATCTGGATTAATACCAGGCTTCAGTTTCCACTGTAGACATTTGCCTAGTTA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU281140 lncRNA upstream 39985 806885 ~ 807312 (+) True G247683
TU281128 lncRNA upstream 52984 794088 ~ 794313 (+) True G247672
TU281123 lncRNA upstream 56801 790279 ~ 790496 (+) True G247667
TU281119 lncRNA upstream 62057 785025 ~ 785240 (+) True G247663
TU281109 lncRNA upstream 83482 763595 ~ 763815 (+) True G247653
TU281080 lncRNA downstream 68574 931004 ~ 932179 (+) True G247639
TU281153 lncRNA downstream 73785 936215 ~ 936445 (+) True G247696
TU281162 lncRNA downstream 104718 967148 ~ 967373 (+) True G247705
TU281168 lncRNA downstream 108209 970639 ~ 970871 (+) True G247711
TU281180 lncRNA downstream 144295 1006725 ~ 1007170 (+) True G247723
CI01000058_00728698_00738214.mRNA mRNA upstream 108359 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00652594_00653181.mRNA mRNA upstream 192394 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00592498_00596709.mRNA mRNA upstream 250484 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_00548398_00567030.mRNA mRNA upstream 280125 547827 ~ 567172 (+) True CI01000058_00548398_00567030
CI01000058_00529237_00544012.mRNA mRNA upstream 303270 529185 ~ 544027 (+) True CI01000058_00529237_00544012
CI01000058_00870909_00930600.mRNA mRNA downstream 8479 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_01239590_01240099.mRNA mRNA downstream 377072 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_01248234_01262911.mRNA mRNA downstream 385804 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01266712_01271962.mRNA mRNA downstream 403323 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
CI01000058_01280337_01289153.mRNA mRNA downstream 416162 1278592 ~ 1289874 (+) False CI01000058_01280337_01289153
TU280966 other upstream 250126 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 391553 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281473 other downstream 366179 1228609 ~ 1228623 (+) True G247990
TU281423 other downstream 590567 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 933283 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3831978 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3832032 4694462 ~ 4696910 (+) False G250039

Expression Profile