RNA id: CI01000058_01248234_01262911.mRNA


Basic Information

Item Value
RNA id CI01000058_01248234_01262911.mRNA
length 1641
RNA type mRNA
GC content 0.42
exon number 11
gene id CI01000058_01248234_01262911
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1248234 ~ 1263318 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCCACATATAATGTGGATGCTCAAAAACCACATCTGCATCCAAACACCTGTCTATTCTCCTTCTTACTCACAGGTGATCTGTATTTACTTCTTCATTAACACATACTCTAACAGGAAGTATAACTATCTCAGTTGGTGGCGTGTGATGGCCCAGACAAAAGACCCGAACTTTGGGCAGTCAACAGGCACTAACTCTGCCCTTCAGAAACTGGACACATTAGCTAGCCGATTTTTTCACAAATATCGGAAAGGGAACCAGGAGAAAGGACTAGAGAATGAGGGGCCACATGTGTCAGAGTACACTGGCCTTTGGGATGCAGCAATGAAGGAATACTTGGCAGAAGCCAAAGAAGATTTTTTGAAAAAATGGGAGTGTCCGCCACAGAGCACATCATGTCTGGATGACTTTGACAGGCTGAAAACTCTTGGGACTGGATCTTTTGGAAGAGTCATGCTAGTCAAGCACAGACAGTCAGCACAATACTATGCTATGAAGATTCTGGACAAGGAAAAAGATAATTCAAATTTATACATGGTCATGGAATATATCCAAGGCGGTGAGATGTTCTCACATCTGAGACGGATTGGAAGATTCAGTGAACAGAATGCACGTTTCTATGCTGCTCAGATTGTTCTGACGTTCGAGTATCTTCATACTCTAGACCTCATCTACAGGGACCTAAAACCTGAAAACTTGCTCATTGATCATCAGGGATACATCCAGGTAACAGACTTTGGCTTTGCCAAACGAGTCAAAGGCAGAACTTGGACATTGTGCGGTACGCCAGAGTACCTGGCACCCGAGATCATTCTCAGCAAGGGCTACAACAAAGCTGTTGACTGGTGGGCGATGGGTGTTCTGATCTATGAAATGGCTGCGGGATATCCACCTTTCTTCGCTGATCAACCAATTCAGATATATGAGAAAATCGTATCTGGCAAGGTACGATTCCCCTCTCACTTCAGTTCAGACCTGAAGGATCTTCTGCGCAATCTGCTGCAGGTGGACCTCACAAAGCGCTTTGGCAATTTGAAAAATGGAGTCAGTGACATCAAAAACCACAGATGGTTTGCTACGACAGACTGGATTGCAATCTATGAGAAGAAGGTTGACGCTCCAATCATACCAAAGTGCAGAGGGCCCGGAGACACAAGTAACTTTGATGATTATGACGAGGAAGACATACGGGTGTCTGTCACAGAGAAATGTATAAAGGAGTTCTTGGAGTTCTAGGGCATCTGTAAAAGCTTTAGTAGGAGTTCCTGGGTCTTGTTCTGGTCTTCTTATTCTTTTTTTTCTTTTTCTTTTTTTTTTTCAATTTATGATTACATTTAATATTTTTACTTGAATATGTTAATTAATTTATTTTTACCCACTTTATGGAATACTGCTCCATTTCCCCCCTGTCTGTTACACATTAAAGAAAAGTATAAAGAAAATGTTCAGTATTATGTAATATGTGAAAGAAGCAGAAAGATTTATGTGATGGATAGGTTTAGGGATAGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATATCTGTAGAATGTGTATATGCTGAAGAAAGCCTGTGGCTGTTCAGAAATATGAAAAGATAA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process

KEGG:

id description
K04345 PKA; protein kinase A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281480 lncRNA upstream 16388 1230210 ~ 1231846 (+) True G247995
TU281373 lncRNA upstream 38283 1201166 ~ 1209951 (+) True G247910
TU281351 lncRNA upstream 94252 1148527 ~ 1153982 (+) True G247889
TU281279 lncRNA upstream 207890 1040111 ~ 1040344 (+) True G247821
TU281278 lncRNA upstream 213888 1034115 ~ 1034346 (+) True G247820
TU281402 lncRNA downstream 2076 1265394 ~ 1265509 (+) False G247928
TU281403 lncRNA downstream 2076 1265394 ~ 1265509 (+) True G247928
TU281396 lncRNA downstream 25761 1289989 ~ 1290487 (+) False G247925
TU281397 lncRNA downstream 25761 1289989 ~ 1290444 (+) True G247925
TU281443 lncRNA downstream 39983 1303301 ~ 1330860 (+) True G247960
CI01000058_01239590_01240099.mRNA mRNA upstream 7934 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_00870909_00930600.mRNA mRNA upstream 317634 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_00847992_00862210.mRNA mRNA upstream 385804 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00728698_00738214.mRNA mRNA upstream 509296 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00652594_00653181.mRNA mRNA upstream 593331 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_01266712_01271962.mRNA mRNA downstream 2435 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
CI01000058_01280337_01289153.mRNA mRNA downstream 15274 1278592 ~ 1289874 (+) False CI01000058_01280337_01289153
CI01000058_01298298_01311989.mRNA mRNA downstream 34758 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
CI01000058_01348684_01352173.mRNA mRNA downstream 85366 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01364846_01374544.mRNA mRNA downstream 101528 1364846 ~ 1374584 (+) True CI01000058_01364846_01374544
TU280966 other upstream 651063 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 792490 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281423 other downstream 189679 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 532395 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3431090 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3431144 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3431144 4694462 ~ 4697161 (+) False G250039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00006370 True 2483 mRNA 0.37 10 NC_007122.7 8129680 ~ 8150894 (+)
bowfin (Amia calva) AMCG00004869 True 3442 mRNA 0.39 10 CM030140.1 7648790 ~ 7666437 (+)