RNA id: TU281473


Basic Information

Item Value
RNA id TU281473
length 15
RNA type TUCP
GC content 0.42
exon number 1
gene id G247990
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1228609 ~ 1228623 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTTTTTTTTTTTTAAAAATGGTACATTTAATTAGATGGGGATGGTAATTTTTGTTGTTGTCTCCAAACTCCAAAAACAAACAACAACAAAAAAGAAAATACAAATGTGACTATAAATGTTACAATTCCTGTCTCTTTTCCCATGTTTTGTGATTAAGGACTCTTATTTTGAAGCATATTTTTTCATTTCCAGTGTTTAGTTTGTTTCCATAGCTGCCTTGTTTGTTTCTATAGTTACCCTTGTTAAGTTTCCTTAGCAATTCCCAAATCCGGTGTTCCCAGCGCTCCCAAGTCTGGTGGTCCCAAGTCTCAGCACTTCCAAGTCTGGTGGTCCCAAGTCCAGTGATCTCAGCACTTGCAAGTCCTGTGGTCCCAAGTCCAGCATGCTTGGAGGTCCTTCCACTGTCATCTGTGCTGCCCGTGATGGCTACCGCCATTTTGTGTGTTTAGGGCACACAATGTCAGCAGTTCCTCCTGAGGCGGTGAGACCTACTGCAGCTCCTCCTGTCACGGCCAAGGAGGCCGTCTCTGAACCCTCTGCCTGCCCTGTCATGGCCAAGGAGGCAGTCTCTGAACCCCCTGTCTGCCCTGTCACAGCCAAAGACAGAGCTGGCACAAGCTCAACTGCCACTCTAGGCAAAACACAGTCATGCCACCCCCCACTTCACACTCATAATTAAACACTTTATATTAGGTGGCCTTAACTACTATGTACTTACATTTCAACTAATCATTTGATACAGTGCACTTATTGTGTACATACATGTTTTTACATTGTACTTATATTTAAAAAAAATACCTGCATGTAGTTACATCTGTAATTAATTTCTGTATTTACATTTATAATTACACTGTTGACCCTTCCCTTACACCTTAACTCACCCTTAAACCTACCCATACCACCAAACCTGTCCCTAACCTTACC

Function

GO:

id name namespace
GO:0006259 DNA metabolic process biological_process

KEGG:

id description
K01158 DNASE2; deoxyribonuclease II

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281373 lncRNA upstream 18658 1201166 ~ 1209951 (+) True G247910
TU281351 lncRNA upstream 74627 1148527 ~ 1153982 (+) True G247889
TU281279 lncRNA upstream 188265 1040111 ~ 1040344 (+) True G247821
TU281278 lncRNA upstream 194263 1034115 ~ 1034346 (+) True G247820
TU281180 lncRNA upstream 221439 1006725 ~ 1007170 (+) True G247723
TU281396 lncRNA downstream 809 1289989 ~ 1290487 (+) False G247925
TU281397 lncRNA downstream 809 1289989 ~ 1290444 (+) True G247925
TU281443 lncRNA downstream 15031 1303301 ~ 1330860 (+) True G247960
TU281516 lncRNA downstream 112718 1400988 ~ 1401268 (+) True G248027
TU281520 lncRNA downstream 115114 1403384 ~ 1403656 (+) True G248031
CI01000058_00870909_00930600.mRNA mRNA upstream 298009 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_00847992_00862210.mRNA mRNA upstream 366179 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_00728698_00738214.mRNA mRNA upstream 489671 728520 ~ 738938 (+) True CI01000058_00728698_00738214
CI01000058_00652594_00653181.mRNA mRNA upstream 573706 652335 ~ 654903 (+) True CI01000058_00652594_00653181
CI01000058_00592498_00596709.mRNA mRNA upstream 631796 592464 ~ 596813 (+) False CI01000058_00592498_00596709
CI01000058_01298298_01311989.mRNA mRNA downstream 9806 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
CI01000058_01348684_01352173.mRNA mRNA downstream 60414 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01364846_01374544.mRNA mRNA downstream 76576 1364846 ~ 1374584 (+) True CI01000058_01364846_01374544
CI01000058_01384467_01388274.mRNA mRNA downstream 95934 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01391493_01394283.mRNA mRNA downstream 103223 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
TU280966 other upstream 631438 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 772865 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281423 other downstream 164727 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 507443 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3406138 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3406192 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3406192 4694462 ~ 4697161 (+) False G250039

Expression Profile