RNA id: TU281396


Basic Information

Item Value
RNA id TU281396
length 360
lncRNA type sense_over
GC content 0.36
exon number 2
gene id G247925
representative False

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1289989 ~ 1290487 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACTCATATTGTACTTACACAAAGATCGAAGAAGAAGAAGAGGACGAACCGAGACGGAAATAATTGTCCAAAATGATCGGAGATCTTCTAATTTTGGGCACTCTGCTCATGAACGCTGGCGCTGTACTCAACTTTAAACTAAAGAAGAGGGAAACACAGTCTCAAGGCTTTGGCGATGAATCTAGATCATCTAGCACTGGTGACAACATCAGAGAGTTTTTGCTGAGTCTGCGGTACTTTCGCATATTCATTGCCCTTTGGAACATTTTCATGATGTTTTGCATGATTTTGTTATTTGGATCATAATACATGGCTGTTACAGTGAGGATAACTACAGACAAAATATATAATGATTGGGCAGATTTCTTTTAATGGTTATTTTTAGAGCGGGATGTCTTTAAGTCTTATACATAGTCTTATCCAACGTCTTACAAGACGTCTGTATATTTTGTACAGAAGTGTGTATGATTAATATTGCTTTTACTTTCTTTGAATCAAATGAGGACAGCATATGGGAATTAGTTTTTGTTTTAAATAAAAATGTCAGTGTTAAATGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281402 lncRNA upstream 14642 1265394 ~ 1265509 (+) False G247928
TU281403 lncRNA upstream 14642 1265394 ~ 1265509 (+) True G247928
TU281381 lncRNA upstream 40175 1221593 ~ 1248904 (+) True G247917
TU281480 lncRNA upstream 57233 1230210 ~ 1231846 (+) True G247995
TU281373 lncRNA upstream 79128 1201166 ~ 1209951 (+) True G247910
TU281443 lncRNA downstream 12814 1303301 ~ 1330860 (+) True G247960
TU281516 lncRNA downstream 110501 1400988 ~ 1401268 (+) True G248027
TU281520 lncRNA downstream 112897 1403384 ~ 1403656 (+) True G248031
TU281524 lncRNA downstream 116169 1406656 ~ 1407006 (+) True G248035
TU281525 lncRNA downstream 118615 1409102 ~ 1409884 (+) True G248036
CI01000058_01266712_01271962.mRNA mRNA upstream 17027 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
CI01000058_01248234_01262911.mRNA mRNA upstream 25761 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01239590_01240099.mRNA mRNA upstream 48779 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_00870909_00930600.mRNA mRNA upstream 358479 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_00847992_00862210.mRNA mRNA upstream 426649 847297 ~ 862430 (+) True CI01000058_00847992_00862210
CI01000058_01298298_01311989.mRNA mRNA downstream 7589 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
CI01000058_01348684_01352173.mRNA mRNA downstream 58197 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01364846_01374544.mRNA mRNA downstream 74359 1364846 ~ 1374584 (+) True CI01000058_01364846_01374544
CI01000058_01384467_01388274.mRNA mRNA downstream 93717 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01391493_01394283.mRNA mRNA downstream 101006 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
TU281473 other upstream 809 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 691908 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 833335 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281423 other downstream 162510 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 505226 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3403921 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3403975 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3403975 4694462 ~ 4697161 (+) False G250039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007478 False 1518 mRNA 0.37 5 NC_007122.7 7151579 ~ 7156693 (-)
eurasian perch (Perca fluviatilis) TU58591 False 1006 TUCP 0.38 2 NC_053115.1 34665236 ~ 34667182 (+)
mexican tetra (Astyanax mexicanus) TU58591 False 706 lncRNA 0.37 5 NC_035901.1 17242390 ~ 17244664 (-)