RNA id: CI01000058_01298298_01311989.mRNA


Basic Information

Item Value
RNA id CI01000058_01298298_01311989.mRNA
length 2812
RNA type mRNA
GC content 0.44
exon number 10
gene id CI01000058_01298298_01311989
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1298076 ~ 1313046 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTATTTAAAGCGTGTAGACATCAGCAGAAGCAATGAGACCATCAATGCAACATTACAGATCATGCTGGATTTATCTCCGGACTGGATTATTCAACACGTTCAGTATATTTGAATCAGCTCAATTTATGATAATCAAATGAAGTAGGCTAGCAAGACTTCAAGTTATCTGATCAACCGAGGACTTATTCTTTAGTAATATTTTTAAAGAATAAGTTATTAAAAATGATTCCAGTACAGCTGATCTCAACTTTGATAGTCGCGTGTGGTTGCAGTGTGCTCGCGGACGCAATGCAAGCTAACTTCACCCTGGATAATGACATCCAGTCCAGCTTCATCCAGCGGAGGCTGAAGAGCCAGGAGCGCAAAGAGATGCAGCGGGAAATCCTCTCCATCCTCGGGCTGCCGCACCGGCCCCGTCCGCTCCTGTACGAGAGACACACTGCAGCTCCCATGTACATGTTGGATTTGTATAACGCCATCCTGGAGGACGGGGATCAGCGCAGCGGGATTGTGTACTCTTATGAACCGGCGTACACGACCCCGGGACCCCCGATGGTGACCCAACAGGACAGTCGCTTTCTCAGCGATGCCGACATGGTGATGAGCTTTGTAAATCTGGGAGGTCACTTGAAAAACCTGGAGTGGGTGGAGGGGTGGTACTCAAGGACGAGTTGTAACAACAAGCATTGTAAAAACAGCACAATACCTCCAGGAAATGTTCTGCTCATGCCACCGGCCTGTGGTTTCTCCCCCAGCTTCAGGCCCCGGGGTACCCAGCGCCCAGATCAATCACTGGCTTATGGAAGCAAACATTTCTTTTTTGGACACAGTGATGTGGTGGATCCAGATGAAGACCTTCATTTGTATCATCAGCACCGTAGAGAGTTTCGCTTTGACCTCTCCCGCATCCCAGTGGGAGAAACCGTGACTGCTGCAGAGTTCCGTATCTACAAGGACTTTGTGCACGAGCGTTATGAAAATGAGACATTCCGTGTCAGTGTGTTCCAGGTGCTTCGACAGCAGCCCAAAAGGGAAAAACCTGACAAAAACCTCTCCAGGGAGCTGTACCTGCTGGACTCACGAGTGGTATGGGCGGCAGAAGAGGGATGGCTGGTATTTGACCTCACGGTCACCAGTAACCACTGGGTCATAAACCCAGGTCAGAACTTGGGACTGCAGCTTTCTCTGGAAACCGCACATGGTGAAAGAATGAACCCAAGGAGAGCAGGTCTGGTGGGCAGCAGTGGACCTCAGAATAAGCAGCCTTTTATGGTAGCGTTTTTGAAAGCATCAGGAATCCACCTCCGAAGTGTACGCTCAGCATCAGGAGACAAACAGAGGGGTCACCACCGTTCTAAAACCCCCAAACCTGGTGTTGCACCCAGCCAGGTGGCTTTAAAGACAGCTGAGGCCACAGACGGTGCCAGTGTAGACCCCAAACAAGGGTGCAAGAAGCATGAACTCTATGTCAGCTTTAGAGATCTGGGATGGCAGGACTGGATCATTGCTCCAGAGGGTTACGCTGCGTACTACTGTGAAGGAGAATGTGTGTTTCCTTTGAACTCTTATATGAACGCCACAAACCATGCTATTGTACAGACACTGGTCCATTTCATAAACCCAGAAACAGTCCCAAAGCCCTGCTGCGCTCCAACTCAGCTGCACGGTATTTCCGTTTTGTACTTCGATGACAGTTCCAATGTAATATTGAAAAAGTACCGCAACATGGTCGTCAGAGCCTGCGGATGCCACTAATCATTACTTCTGCCCTTGGGATTCATAAAGGATGGAAAAAATATGGGATGCAAATACTGATTATTTTGACAATCAAGTGCCCAGGGAGGAAAGAGACTCATTACTGGAGCAAAACTGGACTTTTCTGTTAGAAGAGAATACCCTCAAAGCATACATTTTCATGTAAAACTCAAAACTCCTGGAATTGTATGAGGTTGACCACAGCTGAGTCAAGTGTGTGGTGTTCTGGCTTTCATTTCTGTATAGAAAGCCAAGTTTGGAGTATCAAAGAAGACATGAGCAGATACAGCGAGGGAAAAAAAAAAAAAAAAAAAAACTGGCCTCAGAGATTTAACCACACTGATCAGGGAAGATGCAATTGATTTAAGCATGTTGCTCTATAGAGATTTAATTATAAAACCACTTGTACACACAATGGCATGATTTCTGTATATAATTCACTTAAGTAATTTCTGGATGTAAATCCTGCCATGACTAACCTTATCAATAAGCCTGAGACCACTAGTGAAAATGCTTTTATTTTGGTGAAATGAAAATGATTTTATTTTTTAATATTTTTACTTTAAAATTTATATTATAAGCATAACAATGTGAGTAAAAATTTAAATGAAAAACAAATATGAATTTGAGAATGTTTTAGTACTTGGCATGTCCCCCTTCCAGCATGATCTGAAAATAGAGCATCTTGTGTGCTTCAGTGGGAGAATTCATAATCTTTAATATTTATTTTTAAGTTTTACATCAAAATTTGTTTATTTCCAGGTTTAAATAAGATGTTAAATCACAGAAATTCCATGTGGTCACAGACTTTTAGACCCCACTGTATTTCAGCACAAGATCTGGTGTCCGTTACAATGAGTTGAAGCAATGTTTTCGCTCTTCACAAAATTGCACTATTTCAGGACACTCAACAAACCCTTTCACATATGTTTAGCACTCGATTAAACAGGACTGCAAAAAATATGAAATTCAGTTTCAGTCTTGGGTTTGTCTTTGGTTTCGTCACATACATGAAAGAACACATGTTTTCTCTCAGCAGTTATCAGTCATTCAGTCA

Function

GO:

id name namespace
GO:0005125 cytokine activity molecular_function

KEGG:

id description
K16621 BMP7; bone morphogenetic protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281396 lncRNA upstream 7589 1289989 ~ 1290487 (+) False G247925
TU281397 lncRNA upstream 7632 1289989 ~ 1290444 (+) True G247925
TU281402 lncRNA upstream 23639 1265394 ~ 1265509 (+) False G247928
TU281403 lncRNA upstream 23639 1265394 ~ 1265509 (+) True G247928
TU281381 lncRNA upstream 49172 1221593 ~ 1248904 (+) True G247917
TU281516 lncRNA downstream 87942 1400988 ~ 1401268 (+) True G248027
TU281520 lncRNA downstream 90338 1403384 ~ 1403656 (+) True G248031
TU281524 lncRNA downstream 93610 1406656 ~ 1407006 (+) True G248035
TU281525 lncRNA downstream 96056 1409102 ~ 1409884 (+) True G248036
TU281417 lncRNA downstream 149237 1462283 ~ 1465887 (+) True G247934
CI01000058_01280337_01289153.mRNA mRNA upstream 8202 1278592 ~ 1289874 (+) False CI01000058_01280337_01289153
CI01000058_01266712_01271962.mRNA mRNA upstream 26024 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
CI01000058_01248234_01262911.mRNA mRNA upstream 34758 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01239590_01240099.mRNA mRNA upstream 57776 1239502 ~ 1240300 (+) True CI01000058_01239590_01240099
CI01000058_00870909_00930600.mRNA mRNA upstream 367476 870909 ~ 930600 (+) True CI01000058_00870909_00930600
CI01000058_01348684_01352173.mRNA mRNA downstream 35638 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01364846_01374544.mRNA mRNA downstream 51800 1364846 ~ 1374584 (+) True CI01000058_01364846_01374544
CI01000058_01384467_01388274.mRNA mRNA downstream 71158 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01391493_01394283.mRNA mRNA downstream 78447 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
CI01000058_01431719_01434294.mRNA mRNA downstream 118513 1431559 ~ 1434513 (+) True CI01000058_01431719_01434294
TU281473 other upstream 9806 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 700905 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 842332 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281423 other downstream 139951 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 482667 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3381362 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3381416 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3381416 4694462 ~ 4697161 (+) False G250039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007475 False 3384 mRNA 0.45 7 NC_007122.7 7107798 ~ 7139555 (-)