RNA id: CI01000058_01364846_01374544.mRNA


Basic Information

Item Value
RNA id CI01000058_01364846_01374544.mRNA
length 2626
RNA type mRNA
GC content 0.44
exon number 17
gene id CI01000058_01364846_01374544
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1364846 ~ 1374584 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGACTGGAGAGGTGTCACATGGGCAGGTACCTCCCGGGGGGTGGGACAGCATGTTCAGTTACAGCTCTTCCCCCTACATACTGCACTTCAAAGTCTTGGAGTCGGACTGGTGGACGTGTTTGGCGTTTTGGTCTGGCTGCCCCAACGATCTCCTCATCAGATTCTATGGTACCAGGAATGAACACTGTCTCCGGCTCGAAGGACCAGTTGTTGGAGAGGAAAGGAGACTGCTAGGCTCTGGTTCTGACTATCAGCAGTACACTCCTAGGGTGTCGAGAGATTTGCAGCTTGTACCTGAGACCTCTACGCCGAACTCGAACACTTCTCGCTGTCTGTTTAGTGATCGAGACACTCAGCAAATTAAACTGGACCGTAGCTATTTAGTGGAGTTCATGCTAAAAGGCAAAGGTGTGGATGAAGACCCAAAGGGTGTCCTGTCTATTGATTCAAGCACAGGAGTCATTAAAGTCCACCGTAAGGTCGACTTTGAGCAATACAGTGTTTTGATGCTGACCTTTCAAGCAAGAAATAAATCCAACTTGGCCATAGACACACAACTAGGCATGGAGGTCAACATACTGGACATCAATGACAACCCGCCAATATTCCAGAGAAAAGTTTATGATGTCACTATAAATGAGGCAGCAAAACAAGGTAGTTTTGTTGTTGGTGTATTAGCAATTGATAAGGATGCAGCGGGAACTCTGAATTCCACCATTGATTACAAAATCATTTCCGTAGCTCCAGCCACTAAAAATACGGAATTCTATATCCAAGACAGTGGTGCAATATCGTTTAAAGGATGCTTTGATTATGAGGTGGCTAATAAATACACTATAATAGTTGAAGCAAAGGATCGTGGAGAAGTTGTAAAGTTGTCAAGCACAGCAACCATAATTCTCAACATTCAGGATGGCAACAACCATATACCAGTTATCACAGGGCAAACGGGTTCAGGGTATGTGGTGGAGGGGATGAAAGGTATCTCCCCTCTCAAAATACACACAACTGATACTGACACCCGTCTCACTCCAGCATGGAGGGTCAGATACTCCATACAAGGGGATAAAGGTGGTCACTTCTCCATTCACACTGATCCAGACACCAATGATGGAATCCTCACAGTGATTAAGCCCCTAGACTTTGAAAAACAAGCAGAACAAAAACTCACCATCTTTGTAGAGAATGAAGAGCCTTATTTCTTTTGTGAGGTGAAGGCTAAACCTGCAGATGGCCTCTGGACCGTCATCACAAATCCATCAAAACCATCCTCTATTAATATTACCATAACAGTGGAAGATGCAAATGATCCTCCATACTTCCCAGATCCAAAAAGGAAAGTAAATATGGAAGAAAATGGTGTTATTGGAGCATTTGTGGACAGAGTGACAGCAGTCGATCCTGACACTGGACGTCCTCACAAACTAGAGTATTCTATTGAACAAGATCCTGCAGATGACCATCCTCCAATGACAAGCACTGCTACAATTCAGATCCACATCGAAGACAAGAACGATAATGTCCCCTTGTTAAAGGAGAACATGGTTTCTGTCTGTCAGTCTGATGAAGTGTCAAGTACAGAGATCACAGCCTATGACCCTGATGGGGATCCATACAGCGGACCATTCAGTTTTGAAGTAATAGGAGATCATAAGGATAAATGGAGCTTTGACCCCAGCCATGGTAACACAGTGCATTTGGTGAAGGATAAAAGTGTTCATGCCAGTCTGTACACACTGATTTTGAAAATCTCTGATAAACAGGGCAGGTTTGTCCTTCAGAATCTCTCTGTTGCCGCATGTGATTGTGCTGTCTCACCAAACTGTCTGCTGCAGCGCAACACACAGCAAACAGTAGGAAGTGGTGTCATAGGAATTACCATCTTTGCCGTGCTGATGATTTTGGCAAGCCTGTTGCTGTCCCTAACTTGCTCTTGTGGGACTGTGAAGTCTCTGGTGGAAGTAGACAATGTCTTAGAAGATGCCCTTCTGCCTTCTAACATTGAGAAACCTGGCACTGATTGTGTGGTCCCGACTATTCTACTGAAGAAAACATCTGTAAGTCAGTCAAAGGAAGCAACTCTTGTCAATAATGGGGTTCAACAGACATCTGACATTCAGCAGGTATCTAGCAATGTTATAGCCACTCAGAGTCTCCCAGTTCAAGTGGATGACCGTTGGTCTAGAGGCAGATCACAGTATTCTAGTGAGAAACAGGCATGGATGCGGAAACAAATCCAGTATCAGAGTGAGAACCACTACCAGGGTTCAACATTTAGCAGGAGGAACTCACAAAGAAGACAGAGTGCCTATTTCATCACCCGATCGACTCTACAAAGCTTGCTTTCTCAGAGGCTGCATTCAATACAGTCCCAGGAAAATGAGTTGCTTGATTACGAGCCTCAACTTTATACCTTTGAGGACAACTCTGAGAACTTTGCAGACCTTGACCCCATAGACCTGCCCAGTAATGAGTTTGATCCTGAGCTTTTCTCTGACCTTGGACCAGCATTTAAGCATCTGGCTTCTATCTGTAACCCAGGGACAATGTCAAAAACAGAAGTGATGAAGAATGGGACTAGATAGTCTAGTGATCAGGGGATGGATTCACAAAACATTTTTAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281443 lncRNA upstream 33986 1303301 ~ 1330860 (+) True G247960
TU281396 lncRNA upstream 74359 1289989 ~ 1290487 (+) False G247925
TU281397 lncRNA upstream 74402 1289989 ~ 1290444 (+) True G247925
TU281402 lncRNA upstream 90409 1265394 ~ 1265509 (+) False G247928
TU281516 lncRNA downstream 26404 1400988 ~ 1401268 (+) True G248027
TU281520 lncRNA downstream 28800 1403384 ~ 1403656 (+) True G248031
TU281524 lncRNA downstream 32072 1406656 ~ 1407006 (+) True G248035
TU281525 lncRNA downstream 34518 1409102 ~ 1409884 (+) True G248036
TU281417 lncRNA downstream 87699 1462283 ~ 1465887 (+) True G247934
CI01000058_01348684_01352173.mRNA mRNA upstream 12258 1348684 ~ 1352588 (+) True CI01000058_01348684_01352173
CI01000058_01298298_01311989.mRNA mRNA upstream 51800 1298076 ~ 1313046 (+) True CI01000058_01298298_01311989
CI01000058_01280337_01289153.mRNA mRNA upstream 74972 1278592 ~ 1289874 (+) False CI01000058_01280337_01289153
CI01000058_01266712_01271962.mRNA mRNA upstream 92794 1265753 ~ 1272052 (+) False CI01000058_01266712_01271962
CI01000058_01248234_01262911.mRNA mRNA upstream 101528 1248234 ~ 1263318 (+) True CI01000058_01248234_01262911
CI01000058_01384467_01388274.mRNA mRNA downstream 9620 1384204 ~ 1388927 (+) True CI01000058_01384467_01388274
CI01000058_01391493_01394283.mRNA mRNA downstream 16909 1391493 ~ 1394419 (+) True CI01000058_01391493_01394283
CI01000058_01431719_01434294.mRNA mRNA downstream 56975 1431559 ~ 1434513 (+) True CI01000058_01431719_01434294
CI01000058_01496481_01498802.mRNA mRNA downstream 120286 1494870 ~ 1499810 (+) True CI01000058_01496481_01498802
CI01000058_01580247_01591754.mRNA mRNA downstream 205079 1579663 ~ 1592253 (+) True CI01000058_01580247_01591754
TU281473 other upstream 76576 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 767675 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 909102 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU281423 other downstream 78413 1452997 ~ 1456447 (+) True G247940
TU281441 other downstream 421129 1795713 ~ 1795757 (+) True G247958
TU283772 other downstream 3319824 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 3319878 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 3319878 4694462 ~ 4697161 (+) False G250039

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007469 False 2649 mRNA 0.45 17 NC_007122.7 7001948 ~ 7029897 (-)