RNA id: TU281441


Basic Information

Item Value
RNA id TU281441
length 45
RNA type TUCP
GC content 0.41
exon number 1
gene id G247958
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 1795713 ~ 1795757 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGTTGTATGAACCAAACGCAACCTCCATACTTGCAAGTGTAAAGAAACAAATTTAGGTTCAAAACACATTAAAATGATGCTACTTACCATCATTTTGATGTTGTCAGTGGCGATTGGAGACACATACCCTTCAGGGAATTTTCAATATTACTTAGAAGATGAAACTCCTGATGAAACATCACTGCGGGTTCTCAGGGGAACTGATGCTCGTCCCACAGCTGGATCTCCTTCTCCCAAGCTCTCAATGCACTTCTCCATGGGTGCAGATCCTCAGCGGAGCACATGGTGGTGGTCTCCAGAAAGGCCTTACACAAAGAGAAGGCAGAATGTCGCGTACTACAATCTCAATTCTTTTGGTCTCCGCTATGGGAAGAGAGAACAGAACACGCTTACAGGATTTAAACAGAAGATACCTGTGAAGTGAGGTCCAGTGGGCCTTTTTTAATACTGTTTTTGTTCTTTTCATGTATTCCTTGTGGTAATTTAATCATCTGATTGCCATAAGTGAATGTTTTTCACTCTAAAATAATGGTCCAGATCACTAGTAATTCTAGAGTGACTAGTAACAAATGAGTGA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281458 lncRNA upstream 43374 1747770 ~ 1752339 (+) True G247975
TU281430 lncRNA upstream 62221 1714284 ~ 1733492 (+) True G247947
TU281431 lncRNA upstream 89330 1686779 ~ 1706383 (+) True G247948
TU281619 lncRNA upstream 118560 1676857 ~ 1677153 (+) True G248112
TU281609 lncRNA upstream 177793 1617351 ~ 1617920 (+) True G248104
TU281625 lncRNA downstream 26057 1823789 ~ 1823990 (+) True G248118
TU281629 lncRNA downstream 34337 1832069 ~ 1832368 (+) True G248122
TU281635 lncRNA downstream 39576 1837308 ~ 1837522 (+) True G248128
TU281642 lncRNA downstream 53942 1851674 ~ 1851901 (+) True G248135
TU281645 lncRNA downstream 58578 1856310 ~ 1856528 (+) True G248138
CI01000058_01740599_01784355.mRNA mRNA upstream 11037 1740599 ~ 1784676 (+) True CI01000058_01740599_01784355
CI01000058_01625351_01664692.mRNA mRNA upstream 129919 1625351 ~ 1665794 (+) True CI01000058_01625351_01664692
CI01000058_01580247_01591754.mRNA mRNA upstream 203460 1579663 ~ 1592253 (+) True CI01000058_01580247_01591754
CI01000058_01496481_01498802.mRNA mRNA upstream 295903 1494870 ~ 1499810 (+) True CI01000058_01496481_01498802
CI01000058_01431719_01434294.mRNA mRNA upstream 361200 1431559 ~ 1434513 (+) True CI01000058_01431719_01434294
CI01000058_01838039_01842964.mRNA mRNA downstream 40307 1838039 ~ 1843230 (+) True CI01000058_01838039_01842964
CI01000058_01957358_02009847.mRNA mRNA downstream 159626 1957358 ~ 2009847 (+) True CI01000058_01957358_02009847
CI01000058_02028188_02037502.mRNA mRNA downstream 230417 2028149 ~ 2037628 (+) True CI01000058_02028188_02037502
CI01000058_02052152_02085378.mRNA mRNA downstream 254231 2051963 ~ 2085455 (+) False CI01000058_02052152_02085378
CI01000058_02227590_02229507.mRNA mRNA downstream 429686 2227418 ~ 2230021 (+) True CI01000058_02227590_02229507
TU281423 other upstream 339266 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 507443 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 1198542 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1339969 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 2896676 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 2896730 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 2896730 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 2896730 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 3028644 4826376 ~ 4849531 (+) True G250094

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
tiger barb (Puntius tetrazona) TU123313 True 1925 TUCP 0.40 7 NC_056709.1 20167305 ~ 20171305 (-)