RNA id: CI01000058_02348646_02354404.mRNA


Basic Information

Item Value
RNA id CI01000058_02348646_02354404.mRNA
length 1687
RNA type mRNA
GC content 0.43
exon number 7
gene id CI01000058_02348646_02354404
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2348615 ~ 2355085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGATAAAAGGCCACAGACCCCCGCTCTCGTCATGCCCAAGAAAGGGAACCGAAAACGGCTGAAATTTAAAGCCGAGGATGTTTGCTCGGAGTCAGTAACTGTGGCTGACTATGCCAACGCCGATCCAGCCATCGTGAAGTCCGGACGAGTTAAAAAGGCTGTTGTTAATGCAATTGAAAAAGAAGTGAAATTACTCTGTGGACTCGAGGCATCTCAGGGTCCTGTGCAGGAAGTGCTCTCGTCTGCAGTCGGTGTGAGGAACACAGCCCATGAGAGCAGTGACGAACTGGACTCAGAGGAAGGGGATGAAATCAAAGGGTCCCGCAAAAAGAAAAATAAAAGACGCAAAGGGCATTTATGCATGACTAAATTCCCTCTTGATGTTTTTTTACCTTTCCCCAGGCACTATAATCTTGATGCAGAACTCCCTGATCGCCTTCAGCCTGATTCTATCGCAAGGATGCATTGTCTTCGTGCCCGTGTGATTCGCTCGCTTTTTCACTTATATGAGCCCTTTAGCTCACGGGTGTCCAGAAGCCCTCCTCTTCCTGAATCTACTCCTACTACACTCCTCAATTCCAAGTGTTTGTTGTTTTGGATCAACAAAGTGTCTGGAAGTAGGTCAGAGCCGATGTGGGAATTCAACTTCAAGTTTGTAAAACTGCCAACCAAGGGCAAAAATGGATGTAGTTTGGGTCTTCAGCTGCCCAAGCAGTATAAAGATGTTCACACTAATCCAGACTCAGACTGTTATCTACTGCGGGTCACTACCCTCAATTTCATTTTTACTTCTGTTGTGATGGGCATGACGTTAACTTTGTTCACCATTAATGTGAGCACAGACATGAGGCACCACCGAGTGCGCCTGGAGTTCCAAGACTCGCCAGTCATTCGAGGAAAGAAACTTAGGGGTGAGCAGGGGGTGCAGGTAGTGCTGGACCCTGTCCACAGCGTGCGCCTCATGGACTGGTGGCACCCTCAGTACCCCACATCTTCATATAATTAGACTGATGAACTCCATCAACCTCCTCAATTACAAAAATATTGCAGAAGACAATTCAGGCCTGTTTCAACCATTTTAAATTCCTGAGTTGGCTTGGCAGTCACTAATTTCTGTTGAATTTTACGCTCTACACTTATCGTGCTGCTTTTATGGACACTTTAGTTTGATCAGAATCCTAACTCAAGGTCTCAAGACATTGTAGGAGGAAATTGCCTTTAATAGTTCAGGTAGCTGCCATATTTAATTTGACATAATTGAAAACAATGTGGGATATGCCATACTGTCATTTTCAACCTGTGTTTTTCTGGAGGGTTTTTTTTTCCTTCCACTTCCAGTGATCAAATTCCAAGTACACAACCATACTTTCTGAACAGACTGTGCTTGCCTCTCTCAGTTTTCATGTATGGCAAAAAAAAAAAAAAAAAAGTCATGACTTCTACATCAGAAGTACATGGCATGGTTTTCTTTCCTTTGAGAATAATTAGGAAATTCCACATCAAATAATCATAACATTTGCATTACTGCAGGACTCTAATCTTAAATCATGTGATTTAATAGTTAGTTGTTTTTGTTTTTCTTCTATTGCATACCCAAGATTCACCTGAACCTGATTTTTCTCACTCGTTCTCTGCAAATTTGTGAATCGGTAAACTGGATGAACATTCAAATCTATGACCAAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU281885 lncRNA upstream 26703 2317218 ~ 2321912 (+) True G248356
TU281681 lncRNA upstream 67797 2042171 ~ 2280818 (+) True G248173
TU281829 lncRNA upstream 110657 2236910 ~ 2237958 (+) True G248303
TU281828 lncRNA upstream 111178 2236910 ~ 2237437 (+) False G248303
TU281717 lncRNA upstream 255885 2090257 ~ 2092730 (+) True G248208
TU281901 lncRNA downstream 43601 2398686 ~ 2398891 (+) True G248372
TU281902 lncRNA downstream 45300 2400385 ~ 2400642 (+) True G248373
TU281903 lncRNA downstream 46778 2401863 ~ 2402123 (+) True G248374
TU281913 lncRNA downstream 61168 2416253 ~ 2416481 (+) True G248384
TU281933 lncRNA downstream 100602 2455687 ~ 2456585 (+) True G248404
CI01000058_02227590_02229507.mRNA mRNA upstream 118594 2227418 ~ 2230021 (+) True CI01000058_02227590_02229507
CI01000058_02052152_02085378.mRNA mRNA upstream 263160 2051963 ~ 2085455 (+) False CI01000058_02052152_02085378
CI01000058_02028188_02037502.mRNA mRNA upstream 310987 2028149 ~ 2037628 (+) True CI01000058_02028188_02037502
CI01000058_01957358_02009847.mRNA mRNA upstream 338768 1957358 ~ 2009847 (+) True CI01000058_01957358_02009847
CI01000058_01838039_01842964.mRNA mRNA upstream 505385 1838039 ~ 1843230 (+) True CI01000058_01838039_01842964
CI01000058_02379628_02392648.mRNA mRNA downstream 23499 2378584 ~ 2392780 (+) True CI01000058_02379628_02392648
CI01000058_02578534_02589495.mRNA mRNA downstream 222976 2578061 ~ 2590541 (+) True CI01000058_02578534_02589495
CI01000058_02592534_02600835.mRNA mRNA downstream 236108 2591193 ~ 2601755 (+) True CI01000058_02592534_02600835
CI01000058_02629861_02631891.mRNA mRNA downstream 274605 2629690 ~ 2632294 (+) True CI01000058_02629861_02631891
CI01000058_02635467_02636768.mRNA mRNA downstream 280091 2635176 ~ 2636985 (+) False CI01000058_02635467_02636768
TU281441 other upstream 550883 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 892168 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 1060345 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 1751444 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 1892871 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 2339323 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 2339377 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 2339377 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 2339377 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 2471291 4826376 ~ 4849531 (+) True G250094

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007858 False 2125 mRNA 0.41 8 NC_007122.7 22363572 ~ 22372072 (-)
eurasian perch (Perca fluviatilis) TU261818 True 437 lncRNA 0.46 1 NC_053130.1 10229462 ~ 10229898 (+)
mexican tetra (Astyanax mexicanus) TU261818 True 801 lncRNA 0.52 5 NC_035918.1 25775397 ~ 25779194 (-)