RNA id: CI01000058_02911431_02958568.mRNA


Basic Information

Item Value
RNA id CI01000058_02911431_02958568.mRNA
length 3192
RNA type mRNA
GC content 0.53
exon number 20
gene id CI01000058_02911431_02958568
representative True

Chromosome Information

Item Value
chromosome id CI01000058
NCBI id null
chromosome length 5213219
location 2911431 ~ 2958568 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAGATCCGAGCCCAGTTGGTGGAGCAGCTTAAGTGTTTGGACCAGCAATGTGAGATCCGCGTGCAGCTCCTGCAGGACCTGCAGGACTTCTTCCGCAAGAAGGCAGAGATCGAGATGGACTACTCCCGCAACCTAGAGAAACTAGCCGAGAGGTTCCTGGCCAAGACGCGCTACACAAAGGACCCTCAATTTAAGAAGGAGCAGAATGTCTTGTCTCCAGTCAACTGCTGGAACCTTCTCTTGGCTCAGGTGAAGAGAGAGAGTCGAGACCACGCCACTCTCAGCGATCTCTACCTCAACAACATCATCCCACGCTTCGCCCAGATCAGCGAGGACTCAGGACGCCTCTTCAAAAAGAGTAAAGAGGTGGGCCTCCAGCTACAGGAGGATTTGATGAAGGTCCTCAATGAGTTGTACACGGTGATGAAGACCTATCACATGTACAATATGGACAGCATCAACGCTGAGAGCAAGCTGAAGGATGCAGAAAAGCAAGAGGAGAAGCAGATGAGCCGCAGTGTCCGACACGAGGACAGGCAGACACCGCGCTCACCCGACTCCCTCACCAGCATCAAGATCGAGGAAAAACATGTGCGCCGCAGCTCCGTCAAGAAGATTGAGAAGATGAAGGAGAAGCGGCAAGCAAAATACACTGAGAACAAGCTGAAAGCCATCAAGGCCAGGAATGAGTACCTTCTTGCTCTGGAGGCCACCAACAGCTGCGTGTTCAAATACTATATCCATGATCTGTCTGACCTCATAGATTGCTGTGACCTAGGCTACCATGCCAGCCTGAACCGTGCACTGCGTACCTACCTCTCGGCTGAGTTTAACGTTGAGACTTCCAAGCACAGTGGTCTGGAGACCATCGAAAATGCTGCAGAGAACCTGGAGGCCAACGCAGACAAACAAAGGCTCATGGAGACCTACAACAATGTCTTTTGCCCTCCGATGCGCTTCGATTTCCAGTCTCACATGGGTGATATGGTGGGACATATGTGTGCCCAGCAGCCTGTACAGGTAGAGCTGATCCAGAGATGCCAGCAGCTACAGTCCCGCCTGTCCACACTGAAGATAGAGAATGAAGAGGTGAAGAAGACGATGGAGGCCACTCTACAGACCATCCAGGACATGGTGACCATTGAGGACTTTGATGTGACTGACTGTTTCCACCACAGTAACTCAATGGAGTCAGTCAAGTCCACTGTGTCTGAATCTTTCATGAGCAAACCCAGCCTAGCCAAGAGACGAGCCAACCAGCAGGAGACAGAACAGTTCTACTTCACGAAACTGAAGGAGTTTCTGGAGGGCAGGAACCTCATCACCAAACTACAGGCTAAACATGAACTGATCCAAAAGACTCTGGGAGAAAGTGAAGCTTCTCTTTCTCTCTCCATCAGCGGACGGAGGAACTCCACTGTGCGAAAACAGGAGCCCAGCCAAATCATTCCCCTGATGGTGGAGAGTTGTATTCGCTTCATCAGTCGACATGGTCTCCATCACGAGGGGATATTCAGGGTGTCTGGCTCCCAGGTGGAAGTCAATGACATTAAGAACGCCTTTGAAAGAGGTGAGGACCCGCTAGCTGGGGATCAGAATGATCATGATATGGACTCCATCGCTGGAGTGTTAAAGCTCTACTTCAGGGGCCTGGAGCACGCCCTCTTTCCTAAGGAAGTCTTCCATGACCTAATGTCCTGTGTCTCCATGGAGAACCTCCAGGACAGAGCTGTCCACATCCGCAAAGTCCTGCTGTCACTACCCAGCAACACCTTGGTTATCATGAGATACCTGTTCGCTTTCCTCAACCATCTGTCCCAGTACAGTGATGACAACATGATGGACCCCTACAACCTGGCTATCTGCTTCGGCCCCACACTCATGTCTGTGCCTGAGGGCCACGACCAAGTCTCCTGCCAGGCACATGTGAATGAGCTCATCAAAACCATTATTATCCATCATGAGAGCATCTTTCCAGGGCCCCGTGAGCTGGAGGGGCCCATCTATGACCATGGAGGAGCCACTGAGGAATACTGTGATAGTCCACACATTGAGCCCCCCCTAGTGGATGAACCTGCTCCTGACACCACCTCTGAAATCCACAACAGCGATGATGTAAAGTCAGGGTCCTTGAACGTTTCAGAGTCTGACCCCATCGAGGCCATTGCACGTTTTGACTACTCTGGACGCACCAACCGCGAGCTTTCCTTTAAGAAGGGGGCGTCTTTGCTGCTGTACCACCGTGCATCTGATGACTGGTGGGAGGGTCGCCACAACGGCACAGAGGGACTCGTGCCGCACCAGTACATTGTAGTGCAGGACATGCCTGATGGATATGCAGGCAGAGGAAGTCCCAAAGCTGACCTAGAGGCATCCCATGATGCTGTGGAAGAGAAAGTGTCTACCAGAGCCAGTGCCAGTTCACCCATTGGAGGTCATGTGGCTGATATATACCTAGCTAACCTCAACAAGTTGAGGAAACGTCCAGAAGCAACCAGCATCCGGAGAACAATCCGGGCAGTGGAGGGGCTTGGTGAGGGCTCATCCGGAGCAGCAGGGGGTTTAAAGACCTCCTCCATGCCTGCAGGTGGACTGGCCAAGGAGGGGACAGACAAGCGACCAGTCAGCGCTCACAGCGTCCTGAACTCCATCACTCGACACTCGTCTCTGAAGACTAAGGTGGAAGGTCCTCAGCTCCGTAAGTCCACGCCTGCAGGACGATCCAAGAGTTTCAGCAATCACAGACCACTGGACCCGGAGGTCATCGCTCAGGTGGAGCACAGCTCACAGGACATTGAGGCCACTATGAACACAGCTCTAAGTGATCTCCGAGAGCTGGAGAGGCAGAGCAACGTCAAACACGCTCCTGACGTTGTGCTTGACACTCTAGAGCAGCTAAAAAGCGGCGGGGCTTCTGAACCCTCCAGCCCGCTTCATTCCCGCCTGCTCCGTGAGGCCGACTCCTCCCAGCATCCTCTGCAGCGCAGCGCCAGTTCGGCCAGCGACATGCCCTCCACCTTCCGGCCCGGCAAGAGTGCCAGTCCCAAGAGCCCTCTTTCTTCAATGTCTACCACAGGTCTATCTGCTTCCGGCTCCACCTTCAGAGATAACAAACCTCCAGCCACCAAACCCAAGCCTGTTGTGTTCCCAAAAAGCAGTTCGGCCGGGGGCAGTCCAGCGATGGGATCCCCA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG:

id description
K07526 SRGAP; SLIT-ROBO Rho GTPase activating protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU282102 lncRNA upstream 3234 2891351 ~ 2908197 (+) True G248566
TU282110 lncRNA upstream 32643 2867222 ~ 2878788 (+) True G248574
TU282053 lncRNA upstream 225797 2685275 ~ 2685634 (+) True G248519
TU282050 lncRNA upstream 237769 2673375 ~ 2673662 (+) True G248516
TU282012 lncRNA upstream 274518 2609762 ~ 2614618 (+) True G248483
TU282130 lncRNA downstream 5925 2964493 ~ 2964823 (+) True G248594
TU282149 lncRNA downstream 149205 3107773 ~ 3108154 (+) True G248613
TU282150 lncRNA downstream 150441 3109009 ~ 3109249 (+) True G248614
TU282104 lncRNA downstream 153216 3111784 ~ 3114371 (+) True G248568
TU282154 lncRNA downstream 160500 3119068 ~ 3119298 (+) True G248618
CI01000058_02883775_02884290.mRNA mRNA upstream 25727 2882164 ~ 2885704 (+) True CI01000058_02883775_02884290
CI01000058_02650808_02653235.mRNA mRNA upstream 258060 2650436 ~ 2653371 (+) True CI01000058_02650808_02653235
CI01000058_02635467_02636768.mRNA mRNA upstream 274446 2635176 ~ 2636985 (+) False CI01000058_02635467_02636768
CI01000058_02629861_02631891.mRNA mRNA upstream 279137 2629690 ~ 2632294 (+) True CI01000058_02629861_02631891
CI01000058_02592534_02600835.mRNA mRNA upstream 309676 2591193 ~ 2601755 (+) True CI01000058_02592534_02600835
CI01000058_02964886_02978501.mRNA mRNA downstream 6318 2964886 ~ 2978895 (+) True CI01000058_02964886_02978501
CI01000058_02979997_03027744.mRNA mRNA downstream 21429 2979997 ~ 3028144 (+) True CI01000058_02979997_03027744
CI01000058_03034418_03038200.mRNA mRNA downstream 75850 3034418 ~ 3038344 (+) True CI01000058_03034418_03038200
CI01000058_03066079_03101574.mRNA mRNA downstream 107511 3066079 ~ 3101574 (+) True CI01000058_03066079_03101574
CI01000058_03169524_03172961.mRNA mRNA downstream 210477 3169045 ~ 3173702 (+) True CI01000058_03169524_03172961
TU281441 other upstream 1113699 1795713 ~ 1795757 (+) True G247958
TU281423 other upstream 1454984 1452997 ~ 1456447 (+) True G247940
TU281473 other upstream 1623161 1228609 ~ 1228623 (+) True G247990
TU280966 other upstream 2314260 592331 ~ 597171 (+) True CI01000058_00592498_00596709
TU280659 other upstream 2455687 435042 ~ 455744 (+) True CI01000058_00435196_00437830
TU283772 other downstream 1735840 4694408 ~ 4696910 (+) False G250039
TU283769 other downstream 1735894 4694462 ~ 4696910 (+) False G250039
TU283770 other downstream 1735894 4694462 ~ 4697161 (+) False G250039
TU283771 other downstream 1735894 4694462 ~ 4697032 (+) True G250039
TU283837 other downstream 1867808 4826376 ~ 4849531 (+) True G250094

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00007849 False 7297 mRNA 0.44 23 NC_007122.7 21406686 ~ 21585176 (-)
bowfin (Amia calva) AMCG00013910 True 3333 mRNA 0.63 21 CM030125.1 46470371 ~ 46507717 (-)